Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_E02
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0421 + 23331702-23331723,23332161-23332197,23333397-233335... 29 3.2
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 29 4.2
08_02_0841 - 21749599-21749978,21750409-21753367 29 5.6
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 29 5.6
01_02_0062 - 10718495-10719301,10719469-10719699 29 5.6
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 28 7.4
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92... 28 7.4
06_03_0560 + 22174655-22174720,22175208-22175615,22176540-22177787 28 9.7
03_02_0039 - 5213699-5214775,5214815-5215093,5215300-5215776,521... 28 9.7
01_02_0060 - 10711215-10711801,10711840-10712026,10712117-10712347 28 9.7
>11_06_0421 +
23331702-23331723,23332161-23332197,23333397-23333533,
23333675-23334241,23335068-23335777,23335915-23336102,
23336489-23336918
Length = 696
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 637 RRSALKFSIVHFCLSSDSLHVSMVIL--SLLREIAMHFSLEPCFSSFVLG 494
RR L SI LS ++ +S ++ SL EI SL CF S+V+G
Sbjct: 553 RRVLLLVSIPFLTLSVGAISLSNIVKMGSLPHEILFQLSLTICFCSYVIG 602
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = +3
Query: 441 VVLYPCHGAKGNQLWLYDPNTKLLKHGSSEKCMAISRNKDKITMETCKESEDRQKWTMEN 620
V +Y HG L L N +L KHGS + MA+ NK + S+D Q++ N
Sbjct: 158 VKMYVDHG-----LHLTSINHELQKHGSPDMIMALVGNKADLHDNRSVSSQDAQEYAERN 212
>08_02_0841 - 21749599-21749978,21750409-21753367
Length = 1112
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 187 ANLSNGT*KTSIRNCLSLENRLLMERYAILASKRFVWTLQPASQITISQSDFT 345
AN NGT + N LE L E I +W+++ + I ++ FT
Sbjct: 338 ANQLNGTVPKELANLRKLEKLFLFENRLIGEFPEDIWSIKSLQSVLIYENSFT 390
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 468 KGNQL--WLYDPNTKLLKHGSSEKCMAISRNKDKITME 575
+GN L WL P+ KL KH + + C+ +R+ D T E
Sbjct: 690 QGNMLESWLASPSDKLKKHSTEKACLLKNRD-DAATSE 726
>01_02_0062 - 10718495-10719301,10719469-10719699
Length = 345
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 33 RTGVNVLKKNSVR-LAEVWLDDYAKYYYQRVGNDKGDYGDVSSRKTLRKNLGCKSFEWYL 209
++ N N++R + L D A Y VG GDY D S K + NL + +W L
Sbjct: 236 KSAPNPTLANNIRDIDAATLGDLASYVVPAVG---GDYLDNSYYKNNKNNLVLFNSDWAL 292
Query: 210 KNIYPELFIPGESVAHGEIRNIGF 281
L E +G + NI F
Sbjct: 293 VGSNATLQHVNEYAENGTLWNIDF 316
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 683 FVGLWLLDLSYKFWTEALSIE 621
F LW+LDLSY W LS+E
Sbjct: 429 FQKLWVLDLSYTDWYWLLSVE 449
>04_01_0084 -
912255-912368,912738-912822,914050-917105,920290-920508
Length = 1157
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 683 FVGLWLLDLSYKFWTEALSIE 621
F LW+LDLSY W LS+E
Sbjct: 455 FQKLWVLDLSYTDWYWLLSVE 475
>06_03_0560 + 22174655-22174720,22175208-22175615,22176540-22177787
Length = 573
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 616 RISMLSASVQNL*LRSSSQRPTKKSYSFKIQRLDDKD 726
R+ + V ++ + S S P KK+ F IQ+L DKD
Sbjct: 70 RVPIDLVMVLDVDVESVSLEPVKKAMKFAIQQLSDKD 106
>03_02_0039 -
5213699-5214775,5214815-5215093,5215300-5215776,
5216073-5216438
Length = 732
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 571 WKRAKNQKTGRNGQWRISMLSASVQNL*LRSSSQRPTKKSYS 696
W++ R+ +WR+S+L+A+ L L SS P YS
Sbjct: 665 WEKVSLISPMRSTKWRLSLLAAAWSKLCLHVSSSPPYHVVYS 706
>01_02_0060 - 10711215-10711801,10711840-10712026,10712117-10712347
Length = 334
Score = 27.9 bits (59), Expect = 9.7
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +3
Query: 60 NSVR-LAEVWLDDYAKYYYQRVGNDKGDYGDVSSRKTLRKNLGCKSFEWYLKNIYPELFI 236
N++R + L D A Y VG GDY D S K + NL +W L L
Sbjct: 235 NNIRDIDAATLGDLASYVVPAVG---GDYLDNSYYKNNKNNLVLFHSDWALVGTNSTLQH 291
Query: 237 PGESVAHGEIRNIGF 281
E +G + NI F
Sbjct: 292 VNEYAENGTLWNIDF 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,756,999
Number of Sequences: 37544
Number of extensions: 481757
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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