Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_E01
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.32 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.74 
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    28   1.3  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   4.0  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   4.0  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   5.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 523 SPARWPRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSY 350
           S  R P S P R S    S +S  P+ S    +P +  P      P V +P  +   PS 
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP-VKSPPSAPSLPSA 193

Query: 349 TLPLPPTRNEGPMSQ 305
             P+PP     P+SQ
Sbjct: 194 VPPMPPKVPPPPLSQ 208


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 496 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 338
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -2

Query: 659 YAVIMLRVLDGVHVLQPLRPASYLV-VELPAGALRGN 552
           YAV +L +LD +HV+   + ASY++ ++   G+++G+
Sbjct: 86  YAVQVLAMLDSLHVVDKDKVASYIIGLQNEDGSMKGD 122


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = -3

Query: 547 CRCATAR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 392
           CR AT    P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 391 *VCAPTCSQPEPSY 350
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 541 TDSSLPLRAPAGSSTTRYDAGLSGWRTWTPSRTRN 645
           TD S+PLRA +  S T Y + L    + T +R+ N
Sbjct: 138 TDDSVPLRAVSTVSLTPYKSELPSGASTTQNRSPN 172


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 331 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 242
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,082
Number of Sequences: 5004
Number of extensions: 61186
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)