Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_D20
(843 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 30 0.47
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 28 1.4
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 28 1.4
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 28 1.9
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 1.9
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 28 1.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 2.5
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 27 4.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 4.4
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.9 bits (64), Expect = 0.47
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -2
Query: 569 LNFQ*VLNLCLGMPKPHFQSCKEYNKIELHHK-LPTNESSLN--F*VIRYLTELYLSFHC 399
LN + + ++ L PKP C ++ + +H +P +S + R L+ LSF C
Sbjct: 542 LNVKSIESISLSFPKP----CSDFVVVPVHETFVPIGLTSYGRLYAEQRLLSTGVLSFFC 597
Query: 398 YYTEKFLIVTFASKLLIFFH 339
TE+F++ T LL F H
Sbjct: 598 --TERFVLFTTTKNLLKFVH 615
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +2
Query: 494 YCTLYNFENVVSAYPNISLILIENLVAFYW----SEQGFKIIKMDL-YQKKILKIVQTII 658
YC L EN++S +I I++EN W S I +L Y +IL I+
Sbjct: 217 YCVLSLMENLLSVDNSICSIIVENTTLVEWLLSRSSVDETSISTNLQYAVEILAIILANS 276
Query: 659 KEYKIPV 679
KE K+ V
Sbjct: 277 KEAKLKV 283
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = -3
Query: 649 LNYFQYFFLIKIHFYYFKTLL*PIKCY*IFNKY*TYVWVCRNHIFKVVKSTIKLSCIINF 470
++ F F L+ IH + L P + KY T VW R+ I + SCI
Sbjct: 13 IDIFGEFLLVSIHCILYARRLYPQDLFIKARKYNTIVWQSRHPILCEYIEEVVQSCIEEL 72
Query: 469 Q 467
Q
Sbjct: 73 Q 73
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/31 (38%), Positives = 23/31 (74%)
Frame = +2
Query: 620 YQKKILKIVQTIIKEYKIPVLYYKPQYFHSS 712
++K++L +VQT+ KEY + +L+ P +F S+
Sbjct: 260 WKKELLGLVQTLYKEYWVLLLF--PMFFSSN 288
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 281 ELDGPEIGVVLLATDGSISHEKILKVLTQKLLLKISQYNSNG 406
E+DGP+ +L S EK ++ K+LL IS SNG
Sbjct: 550 EVDGPKYEKLLNDLSPSFIQEKPETLIKSKILLPISMLISNG 591
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 179 ESGIKNEDLIEMSSDGKRASFLIIDIICEALVPSELDG 292
+SGIK + + S GK + +++D + LV + LDG
Sbjct: 474 QSGIKRKSFGQSSLSGKPVTAVMLDNVNRILVTASLDG 511
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = -1
Query: 324 SVANSTTPISGPSSSLGTKASQIMSIIKNEARFPSLDISIKSSFLIPDSNN 172
S++ S+TP+ PS+S+ +K + +S + +E PS S ++ ++ S N
Sbjct: 160 SMSPSSTPVFSPSASVSSKVASSVSYVSSE---PSDSSSSTNTVILTTSVN 207
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 414 SKFPLLLY*EIFNSNFCVKTFNIFS*LIDPSVANSTTPISGPSSSLGTKASQIM--SIIK 241
SK LL Y ++ FC T++ L + +A T P GPS S K + ++ I
Sbjct: 91 SKTCLLRY-KLLIKTFCCITYSKIENLSNTRMARLTAPSKGPSFSNLNKPNDLLKAEIED 149
Query: 240 NEA 232
NEA
Sbjct: 150 NEA 152
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 768 VI*TILTFLMFPYSLDLSKK*NIS 839
+I ++L F+ YSLDLSK+ N++
Sbjct: 201 IIVSVLVFIFTNYSLDLSKEKNVA 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,415
Number of Sequences: 5004
Number of extensions: 57364
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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