Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D20
         (843 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08837-1|CAA70065.1|  280|Homo sapiens XRCC2 protein.                  51   6e-06
BC042137-1|AAH42137.1|  280|Homo sapiens X-ray repair complement...    51   6e-06
AF520762-1|AAM55241.1|  280|Homo sapiens X-ray repair complement...    51   6e-06
AF035587-1|AAC05369.1|  280|Homo sapiens X-ray repair cross-comp...    51   6e-06
AC003109-1|AAC05802.1|  280|Homo sapiens Xrcc2 protein.                51   6e-06

>Y08837-1|CAA70065.1|  280|Homo sapiens XRCC2 protein.
          Length = 280

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
 Frame = +2

Query: 101 KMESGIQLLSRLRKNKEIRNYYPTLF--ESGIKNEDLIEMSS-DGKRASFLIIDIICEAL 271
           + ESG +LL+RL     ++   P LF  E    + D++E    +G   + ++  +    +
Sbjct: 7   RAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCI 66

Query: 272 VPSELDGPEIGVVLLATDGSISHEKILKVLTQKLLLKISQYNSNGNXXXXXXXXXXXXXX 451
           +P    G E+ V+ + TD      +++ +L  +L    SQ +                  
Sbjct: 67  LPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL----SQSSEE----------IIKYCL 112

Query: 452 XXXXXXEVYDATQFYCTLYNFENVVSAYPNISLILIENLVAFYWSEQ---GFKIIKMDLY 622
                     +T    TLY+ E++  ++P++ L+++++L AFYW ++   G  +   +  
Sbjct: 113 GRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQEST 172

Query: 623 QKKILKIVQTIIKEYKIPVLYYKPQ 697
            +K  + ++ ++ +Y++ VL+   Q
Sbjct: 173 LRKCSQCLEKLVNDYRL-VLFATTQ 196


>BC042137-1|AAH42137.1|  280|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 2 protein.
          Length = 280

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
 Frame = +2

Query: 101 KMESGIQLLSRLRKNKEIRNYYPTLF--ESGIKNEDLIEMSS-DGKRASFLIIDIICEAL 271
           + ESG +LL+RL     ++   P LF  E    + D++E    +G   + ++  +    +
Sbjct: 7   RAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCI 66

Query: 272 VPSELDGPEIGVVLLATDGSISHEKILKVLTQKLLLKISQYNSNGNXXXXXXXXXXXXXX 451
           +P    G E+ V+ + TD      +++ +L  +L    SQ +                  
Sbjct: 67  LPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL----SQSSEE----------IIKYCL 112

Query: 452 XXXXXXEVYDATQFYCTLYNFENVVSAYPNISLILIENLVAFYWSEQ---GFKIIKMDLY 622
                     +T    TLY+ E++  ++P++ L+++++L AFYW ++   G  +   +  
Sbjct: 113 GRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQEST 172

Query: 623 QKKILKIVQTIIKEYKIPVLYYKPQ 697
            +K  + ++ ++ +Y++ VL+   Q
Sbjct: 173 LRKCSQCLEKLVNDYRL-VLFATTQ 196


>AF520762-1|AAM55241.1|  280|Homo sapiens X-ray repair complementing
           defective repair in Chinese hamster cells 2 protein.
          Length = 280

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
 Frame = +2

Query: 101 KMESGIQLLSRLRKNKEIRNYYPTLF--ESGIKNEDLIEMSS-DGKRASFLIIDIICEAL 271
           + ESG +LL+RL     ++   P LF  E    + D++E    +G   + ++  +    +
Sbjct: 7   RAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCI 66

Query: 272 VPSELDGPEIGVVLLATDGSISHEKILKVLTQKLLLKISQYNSNGNXXXXXXXXXXXXXX 451
           +P    G E+ V+ + TD      +++ +L  +L    SQ +                  
Sbjct: 67  LPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL----SQSSEE----------IIKYCL 112

Query: 452 XXXXXXEVYDATQFYCTLYNFENVVSAYPNISLILIENLVAFYWSEQ---GFKIIKMDLY 622
                     +T    TLY+ E++  ++P++ L+++++L AFYW ++   G  +   +  
Sbjct: 113 GRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQEST 172

Query: 623 QKKILKIVQTIIKEYKIPVLYYKPQ 697
            +K  + ++ ++ +Y++ VL+   Q
Sbjct: 173 LRKCSQCLEKLVNDYRL-VLFATTQ 196


>AF035587-1|AAC05369.1|  280|Homo sapiens X-ray repair
           cross-complementing protein 2 protein.
          Length = 280

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
 Frame = +2

Query: 101 KMESGIQLLSRLRKNKEIRNYYPTLF--ESGIKNEDLIEMSS-DGKRASFLIIDIICEAL 271
           + ESG +LL+RL     ++   P LF  E    + D++E    +G   + ++  +    +
Sbjct: 7   RAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCI 66

Query: 272 VPSELDGPEIGVVLLATDGSISHEKILKVLTQKLLLKISQYNSNGNXXXXXXXXXXXXXX 451
           +P    G E+ V+ + TD      +++ +L  +L    SQ +                  
Sbjct: 67  LPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL----SQSSEE----------IIKYCL 112

Query: 452 XXXXXXEVYDATQFYCTLYNFENVVSAYPNISLILIENLVAFYWSEQ---GFKIIKMDLY 622
                     +T    TLY+ E++  ++P++ L+++++L AFYW ++   G  +   +  
Sbjct: 113 GRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQEST 172

Query: 623 QKKILKIVQTIIKEYKIPVLYYKPQ 697
            +K  + ++ ++ +Y++ VL+   Q
Sbjct: 173 LRKCSQCLEKLVNDYRL-VLFATTQ 196


>AC003109-1|AAC05802.1|  280|Homo sapiens Xrcc2 protein.
          Length = 280

 Score = 50.8 bits (116), Expect = 6e-06
 Identities = 42/205 (20%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
 Frame = +2

Query: 101 KMESGIQLLSRLRKNKEIRNYYPTLF--ESGIKNEDLIEMSS-DGKRASFLIIDIICEAL 271
           + ESG +LL+RL     ++   P LF  E    + D++E    +G   + ++  +    +
Sbjct: 7   RAESGTELLARLEGRSSLKEIEPNLFADEDSPVHGDILEFHGPEGTGKTEMLYHLTARCI 66

Query: 272 VPSELDGPEIGVVLLATDGSISHEKILKVLTQKLLLKISQYNSNGNXXXXXXXXXXXXXX 451
           +P    G E+ V+ + TD      +++ +L  +L    SQ +                  
Sbjct: 67  LPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL----SQSSEE----------IIKYCL 112

Query: 452 XXXXXXEVYDATQFYCTLYNFENVVSAYPNISLILIENLVAFYWSEQ---GFKIIKMDLY 622
                     +T    TLY+ E++  ++P++ L+++++L AFYW ++   G  +   +  
Sbjct: 113 GRFFLVYCSSSTHLLLTLYSLESMFCSHPSLCLLILDSLSAFYWIDRVNGGESVNLQEST 172

Query: 623 QKKILKIVQTIIKEYKIPVLYYKPQ 697
            +K  + ++ ++ +Y++ VL+   Q
Sbjct: 173 LRKCSQCLEKLVNDYRL-VLFATTQ 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,015,595
Number of Sequences: 237096
Number of extensions: 1725844
Number of successful extensions: 6630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6630
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)