Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D15
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   202   4e-53

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  202 bits (494), Expect = 4e-53
 Identities = 108/243 (44%), Positives = 136/243 (55%), Gaps = 2/243 (0%)
 Frame = +3

Query: 117 RAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 290
           R EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+P
Sbjct: 43  RMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYP 102

Query: 291 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 470
           R+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L GI
Sbjct: 103 RVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGI 162

Query: 471 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 650
           SS                   S  Q+PLF  A+ IT+          AG + +L +DRNL
Sbjct: 163 SSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNL 222

Query: 651 NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFGCLGIIY 830
           NTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  FG  G+++
Sbjct: 223 NTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLW 281

Query: 831 AIL 839
           A+L
Sbjct: 282 AML 284



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 23 IYSTNHKDIGTLYFIFG 73
          I+STN KDI  LY +FG
Sbjct: 12 IFSTNAKDIAILYLLFG 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,238
Number of Sequences: 5004
Number of extensions: 49035
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)