Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D14
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar...   142   3e-35
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha...   141   6e-35
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   1.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.5  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    27   1.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.1  

>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 189

 Score =  142 bits (343), Expect = 3e-35
 Identities = 68/105 (64%), Positives = 82/105 (78%)
 Frame = +3

Query: 9   GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 188
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 189 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 323
           E+IIEGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 141 EIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score =  141 bits (341), Expect = 6e-35
 Identities = 67/105 (63%), Positives = 82/105 (78%)
 Frame = +3

Query: 9   GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKD 188
           GVT+GF+YKMR VYAHFPIN   TE  +++EIRNFLGE+  R +K  PGVTV  S   KD
Sbjct: 81  GVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKD 140

Query: 189 ELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 323
           E+I+EGNSLE+VS SAA I+Q   V+NKDIRKFLDG+YVSE+  +
Sbjct: 141 EIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 353 YLMFLYVI*HNSCFLRYIKTIQELSDILILD 261
           Y  F++ + H S  L Y KT++E++ + I+D
Sbjct: 788 YYEFIHSL-HQSSLLPYFKTLKEIAHLFIID 817


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 168 NSPKQKDELIIEGNSLEDVSSSAALIQQS 254
           +SPK+K +L ++G  L+ +  + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +3

Query: 213 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTT 320
           + D+S+SA    + T + N+++ K  +GL+++ +T+
Sbjct: 78  MSDISNSACRASKITALNNRELYKDDNGLFITVQTS 113


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 159  TVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKN 269
            +V+N    K EL +EG  L+ V ++  ++   T+  +
Sbjct: 1228 SVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNH 1264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,408
Number of Sequences: 5004
Number of extensions: 27253
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)