Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D14
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    149   2e-36
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   149   2e-36
10_08_0406 - 17688069-17690643,17691065-17691132                       27   8.1  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   8.1  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  149 bits (360), Expect = 2e-36
 Identities = 70/110 (63%), Positives = 85/110 (77%)
 Frame = +3

Query: 3   LQGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 182
           + GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K 
Sbjct: 80  ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKV 139

Query: 183 KDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 332
           KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 140 KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  149 bits (360), Expect = 2e-36
 Identities = 70/110 (63%), Positives = 85/110 (77%)
 Frame = +3

Query: 3   LQGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ 182
           + GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT++ S K 
Sbjct: 73  ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKV 132

Query: 183 KDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 332
           KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 133 KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>10_08_0406 - 17688069-17690643,17691065-17691132
          Length = 880

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 345 VFICHLAQQLFSQIHKDHP 289
           +  CHLA +L    H DHP
Sbjct: 673 ILACHLATELLDNEHDDHP 691


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 66  NCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLED 221
           N ++ +  +I +  NF+ EK+    K+  G   +N+ K++ E   + N+L+D
Sbjct: 499 NSISLQVETIEDKTNFMPEKFSELEKVYTGCEKLNNKKEEQEENDKINTLKD 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,891,586
Number of Sequences: 37544
Number of extensions: 155560
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)