Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D09
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.9  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.5  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 218 TLAGYHAKAETKVPCY 265
           TL   + KAE+KV CY
Sbjct: 14  TLFAAYCKAESKVVCY 29


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 264 IPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGS 389
           IPP + D+      K  E+R   F  +PN++Y  +    +GS
Sbjct: 752 IPPLYKDLVA----KRCEERGILFVPIPNKYYEAKQVYRIGS 789


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 233 DSQPEWYVHR*TSTKRTKFTAYQVYFIMGKVWCYTDYP 120
           DS+P   + R     RT FTA+Q+   + K +  T YP
Sbjct: 209 DSEPGIPLKRKQRRSRTTFTAHQL-DELEKAFERTQYP 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,366
Number of Sequences: 336
Number of extensions: 4115
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)