Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D09
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit Psf2|Schizosa...   112   5e-26
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    29   1.0  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    28   1.3  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.8  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    27   2.3  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.1  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   3.1  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    26   5.4  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   9.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.4  

>SPBC725.13c |psf2|dre13, bsh3|GINS complex subunit
           Psf2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 183

 Score =  112 bits (270), Expect = 5e-26
 Identities = 55/168 (32%), Positives = 99/168 (58%)
 Frame = +3

Query: 90  PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 269
           P E+EF+  N  I+I P+ T D++ L+       +      VPLWLA+ LK++    ++P
Sbjct: 13  PEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARIVP 72

Query: 270 PDWMDVEVLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVPNAPEIKTIIKDIWD 449
           P+WM++  LENI+++E  +  F+++P   ++  A L+L   A+D+ +  +I+ I+ DI +
Sbjct: 73  PEWMEIGKLENIRDDELENETFSELP-FRWLETAHLLLNFCADDIEDVEDIRRILLDIRE 131

Query: 450 IRMSKLRTSMDALMKTGGGYGRLDHLTMMEINSVKPLLPAAMDNLLRM 593
            R SK RT ++A+ +       LD+L  MEIN ++P+    MD + ++
Sbjct: 132 ARQSKARTGLEAINEV---QLTLDNLGAMEINEIRPIFREVMDRMRKI 176


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +3

Query: 255 CHVIPPDWMDVEVLENIKEEEKRSRFFTKMPNEHYM----VEAKLILGSAAEDVPNAPEI 422
           C  +P D    E+ E +  E+    F+TK  +E+Y+     +A LIL S  E + ++  +
Sbjct: 30  CSSLPSD--ATELCEILVNEQAPREFWTKFAHEYYIRGLREQAILILKSGLETLKDSESL 87

Query: 423 KTIIKDIWDIRMSKLRTSM 479
             +  +I  I +S  R +M
Sbjct: 88  CILNANIAAIYLSMAREAM 106


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +3

Query: 390 AAEDVPNAPEIKTIIKDIWDIRMSKL 467
           +A DVP+A  + +++KD+ D+ MSKL
Sbjct: 368 SATDVPSAEHVDSVLKDV-DVIMSKL 392


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 377 DTWFSCRRCSQCTRNKDYYQRHLGYKNV*VTNINGCIDENWR 502
           +TW S  RC+ C    D     LG+K     + N CI   ++
Sbjct: 340 NTWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIYK 381


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 255 CHVIPPDWMDVEVLENIKEEEKRSRFFT 338
           C  +P DW+  E  + +KE++K  + F+
Sbjct: 221 CSFVPKDWVRDEFFDTLKEKKKSCKGFS 248


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 555 VSLSLFPSLLNDLICHSHLQFSSMHPLMFVT*TFLYPRCL 436
           +SL LF S LN  +   H  F S+H L  +T  F+Y   L
Sbjct: 520 ISLILFVSFLNRRLI-LHYSFESVHQLKTLTRKFIYSSLL 558


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 402  VPNAPEIKTIIKDIWDIRMSKLRT 473
            +PN PE+K  I ++W+  + KL T
Sbjct: 3749 MPNQPEVKQYIPNVWNDVLKKLIT 3772


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 464 VTNINGCIDENWRWLWQIR 520
           +TN   CID+ W  +W +R
Sbjct: 81  ITNFGDCIDDEWYIVWLLR 99


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 187 GPNSPHIKYILSWVKFGVILII 122
           GP SP  +   +W+K G++LI+
Sbjct: 15  GPESPSRRNWKTWIKHGILLIL 36


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 506 LWQIRSFNNDGNKLSETSSTCCYGQPLKDANENEKDSTIAQ 628
           L+ +  FN++   L +  S C      K  N+  KD T+ Q
Sbjct: 293 LYALLQFNHETEYLIQPWSDCLVDVGFKLVNDESKDDTLVQ 333


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 111 GENRIISITPNFTHDKI 161
           G+ + ++ITPNFTH  I
Sbjct: 143 GKEKWVTITPNFTHTPI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,107
Number of Sequences: 5004
Number of extensions: 65770
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)