Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_D09
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1033 - 8178974-8178982,8179123-8179215,8179311-8179341,817... 98 8e-21
11_04_0312 - 16259612-16260231,16260264-16262796 31 1.0
06_03_0532 - 21844213-21844252,21844579-21844836,21845303-218455... 29 3.2
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 29 5.6
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 29 5.6
11_04_0431 + 17687408-17687603,17687772-17688115,17688951-176892... 28 7.4
09_06_0135 - 21069521-21069646,21069778-21069948,21070438-210705... 28 7.4
>01_01_1033 -
8178974-8178982,8179123-8179215,8179311-8179341,
8179434-8179519,8179572-8179624,8180026-8180140,
8180505-8180579,8180683-8180730
Length = 169
Score = 97.9 bits (233), Expect = 8e-21
Identities = 48/147 (32%), Positives = 83/147 (56%), Gaps = 14/147 (9%)
Frame = +3
Query: 90 PYEIEFIGENRIISITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIP 269
P E+EF+ E+ I+ I PN + + +ICG+FGPF + VPLWLA+ LK++ KC +
Sbjct: 14 PSEVEFVAEDEIVEIVPNIRMEALNMICGDFGPFFPQIASKVPLWLAVALKKRGKCTIRT 73
Query: 270 PDWMDVE--------------VLENIKEEEKRSRFFTKMPNEHYMVEAKLILGSAAEDVP 407
PDWM V+ + + E + + F +P HY+ +KL+ A +D+
Sbjct: 74 PDWMTVDSDCLIAYLSVLLLYIFMVLDAERESPKEFQPLP-FHYIEISKLLFDHARDDIS 132
Query: 408 NAPEIKTIIKDIWDIRMSKLRTSMDAL 488
+A ++++I+DI D+R K+ T ++ +
Sbjct: 133 DAYLVRSLIEDIRDVRFHKVETGLETI 159
>11_04_0312 - 16259612-16260231,16260264-16262796
Length = 1050
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 99 IEFIGENRIIS-ITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKCHVIPPD 275
+EF N I+S I DK++++ G +GP G + V L M QK+ VI D
Sbjct: 186 MEFGSRNEIVSQIINALKEDKVHIV-GVYGPCGIGKSLLVAAILEKMKTQKEFDEVITVD 244
Query: 276 WMDVEVLENIK 308
+ LE IK
Sbjct: 245 LREKPGLEEIK 255
>06_03_0532 -
21844213-21844252,21844579-21844836,21845303-21845568,
21845963-21846369,21846528-21847143
Length = 528
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 456 MSKLRTSMDALMKTGGGYGRLDHLTMMEINSVKPLLPAAMDNLLRMQM 599
MSK+ T DA K +G + H T + +P PA + L+R+ +
Sbjct: 43 MSKIHTDHDATTKASSDFGHIVHATPNGV--FRPTFPADIAALIRLSL 88
>11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 132 ITPNFTHDKIYLICGEFGPFRAGLPVNVPLWLAIMLKQKQKC-HVIPPDWMDVEVLE 299
+T F ++ C F AG + + L ++ MLK + KC V PD +D E ++
Sbjct: 1094 LTSYFISEQAPFNCKGFSFLVAGFFLAISLGISFMLKPEAKCTRVAVPDQLDHEAVQ 1150
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 354 HYMVE-AKLILGSAAEDVPNAPEIKTIIKDIWDIRMSKLRTSMDALMKTGGGYGRLDHLT 530
H ++E +LI GSA + + +A E+ I+K++W R ++ + D K + ++ L
Sbjct: 344 HRLLEHEELIYGSAEQVLVDAEEVMYIVKELWRGRSARDQNLKDTGRKM---WRSVNELM 400
Query: 531 MMEINSVKPLLPAAMDNLLRMQMKTKKTAPSLNL 632
++ + K PA + NL+ ++ S L
Sbjct: 401 LVRWDKSK---PAGVSNLILLKFNEADAHESTTL 431
>11_04_0431 +
17687408-17687603,17687772-17688115,17688951-17689287,
17690012-17690087,17690324-17690351,17691047-17691154
Length = 362
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 211 FTGKPARNGPNSPH 170
F G+PARN P+SPH
Sbjct: 255 FLGQPARNDPSSPH 268
>09_06_0135 -
21069521-21069646,21069778-21069948,21070438-21070524,
21070607-21070788,21070905-21070983
Length = 214
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 179 FTAYQVYFIMGKVWCYTDYPILT 111
F A +V + K+WCY +Y I T
Sbjct: 60 FIAMEVVDSLAKIWCYEEYSIAT 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,003,766
Number of Sequences: 37544
Number of extensions: 393062
Number of successful extensions: 931
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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