Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D09
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   1.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.5  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 201 LPVNVPLWLAIMLKQKQKCHVIPPDWMDVEVLENIKEEEK 320
           LPV   LW  I L   Q  H+     ++ E++EN++  EK
Sbjct: 52  LPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEK 91


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 201 LPVNVPLWLAIMLKQKQKCHVIPPDWMDVEVLENIKEEEK 320
           LPV   LW  I L   Q  H+     ++ E++EN++  EK
Sbjct: 90  LPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQANEK 129


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 116 LTNKLDFIRFHYYFYGFNN 60
           +TN LDF    YYFY ++N
Sbjct: 21  MTNVLDF---DYYFYDYSN 36


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +2

Query: 386 FSCRRCSQCTRNKDYYQRHL-GYKNV 460
           F C +CS    NK     HL  + NV
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLKSHSNV 42


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +1

Query: 241 SRNKSAMLSLLTGWTWKFWRILKKRKSVPDSSQRCQMNTI 360
           S N      + T + W FW          D  QR  +NT+
Sbjct: 206 SYNSDIFAMIGTIFLWLFWPSFNSAALEGDDQQRAIINTL 245


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 163 YILSWVKFGVILII 122
           Y+LSW  +GV+ +I
Sbjct: 283 YVLSWTPYGVMSMI 296


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 142 TLPMIKYT*YAVNLVRFVLVYL*TYHSGWLS 234
           T P I    +  N+++FV V   TY   W S
Sbjct: 498 TTPAICVGVFTFNIIKFVPVKYLTYEYPWWS 528


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 142 TLPMIKYT*YAVNLVRFVLVYL*TYHSGWLS 234
           T P I    +  N+++FV V   TY   W S
Sbjct: 551 TTPAICVGVFTFNIIKFVPVKYLTYEYPWWS 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,584
Number of Sequences: 438
Number of extensions: 4346
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)