Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D08
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    32   0.12 
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    31   0.20 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    29   0.81 
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    29   1.1  
SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.9  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    27   4.3  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   4.3  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    27   4.3  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   4.3  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    26   5.7  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   7.6  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   7.6  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 597 DFCYYWMHRACHEVHILWAQHQVHH 671
           DF  YW+HRA H   +    H++HH
Sbjct: 163 DFLIYWIHRALHHRWLYAPLHKLHH 187


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +3

Query: 489 WRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYWMHRACHEVHILWAQHQVH 668
           W  AE + Y+++Y N     L +    +     +  DF  YW HR  H  ++    H++H
Sbjct: 95  WFLAELHGYSYLYDNISDYGLKY-FLCSLPLFVMFSDFGIYWAHRFLHHRYVYPRLHKLH 153

Query: 669 H 671
           H
Sbjct: 154 H 154


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -3

Query: 624 PCASSNSRSRRQELPHTRSACCPRAAPLICSWCRSTCTSK 505
           PC     R  R E      AC  +A P+ C +C   C  K
Sbjct: 32  PCDQCAKRFTRHENLTRHKACHSKAEPIPCPYCEIKCKRK 71


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 689 HGRRNTSIRSSRLVRIYILPTSGICHTTSPVCCSP 793
           H R +   R S+L R+      G C T   VC SP
Sbjct: 335 HRRAHVPYRDSKLTRLLKFSLGGNCRTVMIVCVSP 369


>SPAC22H10.06c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 93

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 480 RIIWRGAESYLYTWIYTNYRLVELPWDST 566
           R IWRG   Y++  +YTN+ +V   W+ T
Sbjct: 9   RDIWRGKCIYVFRCLYTNHAVVS--WNQT 35


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 650 GATSSTPHVRRLQHGRRNTS 709
           G T STP+ RRL+H R +T+
Sbjct: 246 GPTLSTPYNRRLRHKRHSTT 265


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 719 SRLVRIYILPTSGICHTTSPVCCSPPVQLPL 811
           S +++I  L +     T  P+CC+ P+Q PL
Sbjct: 859 SDILKIDTLKSFEALITECPICCNEPIQNPL 889


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 624 ACHEVHILWAQHQVHHTSEDFNM-GVGIR 707
           +CH V  LW  H   H  E  +M GV ++
Sbjct: 53  SCHSVGCLWGHHGEEHAMEHTHMIGVDVK 81


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 695 RRNTSIRSSRLVRIYILPTSGICHTTSPVCCSP 793
           R++   R S+L R+      G C T   VC SP
Sbjct: 336 RQHVPYRDSKLTRLLKFSLGGNCRTCMIVCISP 368


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 275 NSLQMIRNEIRETVLDTRIGEREFRHFVLSYRIDSNKIKTI*IQS 141
           ++L +  N   ET+ +      E  H ++  ++DS K+K I  QS
Sbjct: 423 HALSLSTNSDGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQS 467


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 652 RNIKYTTRQKTSTWASEYVNPFFKAGADLYSTYLWH 759
           + +K  +R+K+ T +SEY  PF    +D     L H
Sbjct: 687 QKLKKPSREKSFTSSSEYSLPFISPASDYQQNPLLH 722


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 318 EKKDDVPNFFKQSWPYFFIFMIL 386
           EKK+ + NF++  W +F  F I+
Sbjct: 677 EKKESLKNFWESLWKFFTHFFIV 699


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 612 WMHRACHEVHILWAQHQVHHTSE 680
           WM   C  V+I WAQ  +  +SE
Sbjct: 472 WMQIPCDWVYIQWAQTYIKQSSE 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,445
Number of Sequences: 5004
Number of extensions: 74902
Number of successful extensions: 240
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)