Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_D08
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 39 0.006
01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920 38 0.007
02_04_0652 - 24742182-24742186,24742535-24742767,24742869-247430... 37 0.023
11_08_0095 - 28323425-28323494,28323577-28323657,28323744-283241... 33 0.28
10_08_0740 + 20225351-20225683,20225750-20226022,20226423-202265... 33 0.37
03_01_0176 - 1416316-1416405,1416705-1416761,1416885-1417010,141... 33 0.37
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 32 0.49
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392... 31 1.1
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 31 1.1
08_02_0581 + 18986084-18986176,18986284-18986668,18986779-189868... 30 2.0
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 30 2.6
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296... 29 4.6
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 29 4.6
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435... 29 4.6
05_01_0475 - 3818121-3820565 29 6.0
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 29 6.0
10_08_0816 + 20789399-20789728,20790098-20790420,20791437-207915... 28 8.0
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 38.7 bits (86), Expect = 0.006
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +3
Query: 552 PWDSTLTWYAAAL----GVDFCYYWMHRACHEVHILWAQHQVHH 671
PW ST A+ V+F YYW+HRA H H L+A++ HH
Sbjct: 121 PWWSTKGMVVTAVLHAGPVEFLYYWLHRALHH-HWLYARYHSHH 163
>01_01_0221 + 1887610-1887838,1889958-1890263,1890631-1890920
Length = 274
Score = 38.3 bits (85), Expect = 0.007
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Frame = +3
Query: 519 WIYTNYRLVELPWDSTLTWYAAAL-GVDFCYYWMHRACHEVHILWAQ-HQVHHTSEDFNM 692
W + E+ W L + A L V+F YWMHR H++ L+ H HH N
Sbjct: 114 WTQCYVNISEVGWPMYLVYLALYLIFVEFGIYWMHRELHDIKPLYKYLHTYHHIYNKENT 173
Query: 693 GVGIRQSVLQGWCGFIFYLPLAFA--IPPAQFVVHHQFSYLYMFW 821
G + +P FA + P F H ++ W
Sbjct: 174 LSPFAGLAFHPLDGILQAIPHVFALYLIPTHFRTHIALLFIEAVW 218
>02_04_0652 -
24742182-24742186,24742535-24742767,24742869-24743092,
24743343-24743402
Length = 173
Score = 36.7 bits (81), Expect = 0.023
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 594 VDFCYYWMHRACHEVHILWAQHQVHH 671
V+F YYW HRA H H L++++ HH
Sbjct: 138 VEFLYYWFHRALHH-HFLYSRYHSHH 162
>11_08_0095 -
28323425-28323494,28323577-28323657,28323744-28324157,
28324236-28324381,28325911-28326048,28326192-28326224
Length = 293
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 597 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGV 698
DF +YW HRA H + H VHH ++G+
Sbjct: 121 DFIFYWGHRALHTKWLYKHVHSVHHEYVMLHLGL 154
>10_08_0740 +
20225351-20225683,20225750-20226022,20226423-20226548,
20226676-20226732,20226994-20227083
Length = 292
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 582 AALGVDFCYYWMHRACHEVHILWAQHQVHHTSED 683
AA+G++F W HRA LW H+ HH D
Sbjct: 132 AAVGMEFWARWAHRALWHAS-LWHMHESHHRPRD 164
>03_01_0176 -
1416316-1416405,1416705-1416761,1416885-1417010,
1417944-1418150,1418235-1418714
Length = 319
Score = 32.7 bits (71), Expect = 0.37
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 582 AALGVDFCYYWMHRACHEVHILWAQHQVHHTSED 683
AA+G++F W HRA LW H+ HH D
Sbjct: 159 AAVGMEFWARWAHRALWHAS-LWHMHESHHRPRD 191
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 32.3 bits (70), Expect = 0.49
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 597 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVG 701
D+ YW+HR +H WA H +H +F +G
Sbjct: 137 DYLGYWIHRL---LHTPWAYHHIHRVHHEFTAPMG 168
>09_04_0189 +
15438538-15438591,15438671-15438891,15438982-15439214,
15439322-15439541,15440091-15440212,15441086-15441339,
15441425-15441532,15441622-15441828,15441929-15442213,
15442312-15442467
Length = 619
Score = 31.1 bits (67), Expect = 1.1
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Frame = +3
Query: 540 LVELP-WDSTLTWYAAALGV---DFCYYWMHRACHEVHILWAQHQVHHTSE-DFNMGVGI 704
L LP WD+ AA L V + +Y HRA H H+ H HH+++ G
Sbjct: 113 LRHLPLWDARGLAVAALLHVAATEPLFYAAHRAFHRGHLFSCYHLQHHSAKVPQPFTAGF 172
Query: 705 RQSVLQGWCGFIFYLPLAFAIPPAQFVVHHQFSYLYMF 818
+ Q G + +PLA A V F+Y+ F
Sbjct: 173 ATPLEQLVLGALMAVPLAAACAAGHGSVALAFAYVLGF 210
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 680 RLQHGRRNTSIRSSRLVRIYILPTSGICHTTSPVCCSPPVQ 802
RLQ + I+ S +VR+++LP S HT V PP++
Sbjct: 276 RLQGQANDFKIQYSSIVRLFLLPKSNNPHTFVVVTLDPPIR 316
>08_02_0581 +
18986084-18986176,18986284-18986668,18986779-18986861,
18986966-18987110,18987823-18987951,18988047-18988171,
18988261-18988419,18988503-18988665,18988750-18988875,
18989110-18989471,18989572-18989772,18989873-18989982,
18990079-18990163,18990298-18990426,18990505-18990610,
18990688-18990776,18990885-18991184
Length = 929
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +1
Query: 547 SCPGTAR*PGMRQLLAST--SAITGCTGPAMR-SIYYGRNIKYTTRQKTSTWASEYVNPF 717
SCP + GM + LA + + P++ + Y K T TW ++++ P
Sbjct: 143 SCPASVLVTGMNRSLAQSLWGGLFPAVPPSLNFTDYLDAFSKIVAGSDTWTWTTQFIEPV 202
Query: 718 FKAGADLY 741
F G LY
Sbjct: 203 FTPGHSLY 210
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +2
Query: 680 RLQHGRRNTSIRSSRLVRIYILPTSGICHTTSPVCCSPPVQ 802
RLQ + I+ S ++R+++LP S HT + PP++
Sbjct: 233 RLQGQANDFKIQYSSILRLFVLPKSNNPHTFVVITLDPPIR 273
>11_01_0393 +
2961434-2961564,2961862-2961865,2962429-2963970,
2964572-2964675,2964791-2964877,2965378-2965414,
2965729-2965801,2965963-2967494
Length = 1169
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 219 WRTRIPPFCSKLSN*QQQNKNDLNTVFTESLH--TS*LTEHLKKKLCNYY 76
WR+RIPP+C+ + +++ +N+ E L S L H KL N +
Sbjct: 537 WRSRIPPYCNYIVTYEKRKPRRMNSDNKEDLEKMMSVLKIHHHHKLRNVF 586
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 624 PCASSNSRSRRQELPHTRSACC 559
PC + RSR PH RS+CC
Sbjct: 397 PCCCGDRRSRAAGDPHGRSSCC 418
>02_01_0589 -
4355207-4355410,4355574-4355747,4356234-4356344,
4356506-4356712,4357609-4357716,4358442-4358698,
4359120-4359241,4359782-4360001,4360877-4361130,
4361782-4362015,4362143-4362189
Length = 645
Score = 29.1 bits (62), Expect = 4.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 606 YYWMHRACHEVHILWAQHQVHH 671
+YW HRA H + H HH
Sbjct: 148 FYWAHRALHRAPLFSRYHAAHH 169
>05_01_0475 - 3818121-3820565
Length = 814
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 693 PC*SLLTCGVLDVAPIVYGPHGRPCASSNSRSRRQELPHTRSACCPRAAPLICS 532
PC + TCG + + P S + +S R R+A C R PL CS
Sbjct: 306 PCTAYATCGPFTICNGIAHPFCDCMESFSQKSPRDWELDNRTAGCSRNTPLDCS 359
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 644 TMGATSSTPHVRRLQHGRRNTSIRSSRLVRIYILPTSGICHTTSPVCCSP 793
TM T S P + +H RR + R+ +LP G P+ C+P
Sbjct: 3 TMPLTFSPPRLLH-RHRRREAKPQRRSATRVSLLPRRGAASARRPLYCAP 51
>10_08_0816 +
20789399-20789728,20790098-20790420,20791437-20791584,
20791679-20791711,20791879-20791950
Length = 301
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 597 DFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVG 701
D+ YW+HR H W ++H +F +G
Sbjct: 138 DYLNYWIHRLLHGE---WGYEKIHRVHHEFTAPIG 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,066,356
Number of Sequences: 37544
Number of extensions: 503200
Number of successful extensions: 1433
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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