Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D08
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical pr...   146   2e-35
U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone...    29   3.1  
AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear recep...    29   3.1  
AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear recep...    29   3.1  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    28   9.5  
U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z93372-2|CAB07547.2|  505|Caenorhabditis elegans Hypothetical
           protein BE10.2 protein.
          Length = 505

 Score =  146 bits (353), Expect = 2e-35
 Identities = 74/207 (35%), Positives = 112/207 (54%), Gaps = 1/207 (0%)
 Frame = +3

Query: 213 FANASVENGFSDFVTDHLKGVGRLFYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEH 392
           F+N S+ +   D +T  L  +   FY+ SP ++  E  DDVPN+  +   ++ +F+  E 
Sbjct: 11  FSNTSLGHRLLDRLT--LTNLRHAFYLISPYETTVESIDDVPNYNAEVSAWWLVFLTAEF 68

Query: 393 IVLRLEG-KPGVRLNDGITSISHGIFQECGRIIWRGAESYLYTWIYTNYRLVELPWDSTL 569
            +L + G +    LND ITSI  G+  +C +   R    +LY  ++ N+R++ELPWDS  
Sbjct: 69  FILFISGHEDRFALNDSITSICAGMLSQCFKFGGRAVAIFLYVIVWDNWRILELPWDSPW 128

Query: 570 TWYAAALGVDFCYYWMHRACHEVHILWAQHQVHHTSEDFNMGVGIRQSVLQGWCGFIFYL 749
           TW       DF YY  HRA HE    W  H +HH+SE +N    +RQ+ +Q     I+  
Sbjct: 129 TWIFCLFFQDFMYYLGHRAVHEAGFFWGLHTIHHSSEYYNFSTALRQAAIQDAGLAIYDC 188

Query: 750 PLAFAIPPAQFVVHHQFSYLYMFWIXT 830
             AF IPP+ F+VH  FS ++ F + T
Sbjct: 189 IQAFFIPPSIFLVHRYFSEIFQFIMHT 215


>U40941-5|AAA81710.1|  300|Caenorhabditis elegans Hypothetical
           protein F35C8.5 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 588 LGVDFCYYWMHRACHEVHILWAQ-HQVHH 671
           L  DF Y+W H   H+V  L+   H VHH
Sbjct: 139 LAFDFTYFWFHYINHKVKWLYRWCHSVHH 167


>Z49128-1|CAA88953.1|  379|Caenorhabditis elegans Hypothetical
           protein M03C11.1 protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 489 WRGAESYLYTWIYTNYRLVELPWDSTLTWYAAALGVDFCYYWMHR 623
           + G   Y+   IY  Y  +E  +DS + W+  ALGV  C+Y M R
Sbjct: 185 YSGTRPYMAPEIYATYLEIEDGYDSRVDWW--ALGV--CFYEMLR 225


>U53154-6|AAC25855.3|  357|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 285 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 431
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204192-1|AAO39196.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 285 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 431
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>AY204191-1|AAO39195.1|  357|Caenorhabditis elegans nuclear receptor
           NHR-107 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 285 FYINSPQDSMFEKKDDVPNFFKQSWPYFFIFMILEHIVLRLEGKPGVRL 431
           FY+N+ +D+    ++D+   F+  W Y F  +I   + L+L     + L
Sbjct: 219 FYVNTVRDNSAISQEDIIRVFEPYWKYHFEQVIDPFLALKLNDMENMAL 267


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 731 RIYILPTSGICHTTSPVCCSPPVQL 805
           R+   P +G C TT+  CC P V +
Sbjct: 161 RVMPCPENGFCETTTGFCCVPGVDV 185


>U58727-3|AAB00583.1|  131|Caenorhabditis elegans Hypothetical
           protein D1005.6 protein.
          Length = 131

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 198 FCSKLSN*QQQNKNDLNTVFTESLHTS*LTEHLKKKLCNYYFFINFKSF 52
           F   + N  + +K   + +FTE+          KKK+ N+ FF NFK F
Sbjct: 49  FSYTVDNMPKVSKKKFDKIFTENFCIK------KKKMQNFQFFFNFKCF 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,754
Number of Sequences: 27780
Number of extensions: 431861
Number of successful extensions: 1216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)