Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D07
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    28   1.4  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    27   4.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   5.5  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   5.5  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   7.2  

>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 653 CRETTRPRPLHRHAASEPARPDDHVLTTAEVHDYPSSESGI 775
           C+E T+P+ L+R A++   RP     TT  V+  PS    +
Sbjct: 462 CQEATQPKSLYRSASAAANRPKT-ATTTDSVNRTPSQRGRV 501


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 270 NCLLHLIRIYDKYNNTSQKFFKTPILIKKSI*ITVSKVWKFFK 142
           N L+   ++Y KY   SQ F  + I IKK + I V   W+ F+
Sbjct: 470 NQLMVFQKLYSKYCTESQHFINSWINIKKELHI-VPVNWEIFE 511


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 554 CVIPWLILSSPICTL 510
           C   WLILS+P+CT+
Sbjct: 278 CSCWWLILSTPLCTI 292


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/57 (22%), Positives = 30/57 (52%)
 Frame = -1

Query: 755 DSREPRQ*LRRDHQAVQVQMQRGDGGDVDASFRDSWRSFFAGMAGAGIDRIECRTPP 585
           D   PR   +  H+A+  Q      G+ +  F+D+W+++ + +  A  ++++  +PP
Sbjct: 57  DENYPRSVAKYLHEALYRQK-----GENNHDFQDAWKAYQSAIKQAESEKMDMESPP 108


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 417 ESSTIPQQIRDFASHL-TPTNISNKITQRNMS*GTYW**EDEPWNH 551
           ES T+ + +++  + +    N  NK+   NM  G++W    + W++
Sbjct: 348 ESETVERLVKEHVTKVFNSLNSKNKLAFNNMHSGSWWISSPDHWHY 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,480
Number of Sequences: 5004
Number of extensions: 64276
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)