Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_D06
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical pr... 205 2e-53
Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 2.1
U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 8.6
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 8.6
>Z73426-1|CAA97792.1| 155|Caenorhabditis elegans Hypothetical
protein F40F11.1 protein.
Length = 155
Score = 205 bits (500), Expect = 2e-53
Identities = 96/142 (67%), Positives = 113/142 (79%), Gaps = 3/142 (2%)
Frame = +1
Query: 37 MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 207
M++QTE+AF KQ TV LN K + +K R+ + VGLGFK PR+A+EGTYIDKKCP+
Sbjct: 1 MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60
Query: 208 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 387
GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+ H SP FRD+ G
Sbjct: 61 GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120
Query: 388 DIVTIGECRPLSKTVRFNVLKV 453
D+VTIGECRPLSKTVRFNVLKV
Sbjct: 121 DLVTIGECRPLSKTVRFNVLKV 142
>Z69883-3|CAA93741.2| 450|Caenorhabditis elegans Hypothetical
protein C27C12.4 protein.
Length = 450
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 249 SENEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 368
S+NED E+ DP LP + + E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 109 SSCHLSCSGKRWPVSETLSLSDPPFCLTMKRKHR 8
+SC++ CSG++W E S S+ C + + HR
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSET--CGSNGKMHR 1042
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 109 SSCHLSCSGKRWPVSETLSLSDPPFCLTMKRKHR 8
+SC++ CSG++W E S S+ C + + HR
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSET--CGSNGKMHR 1042
>U22831-4|AAK20066.1| 633|Caenorhabditis elegans Hypothetical
protein F47D12.5 protein.
Length = 633
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 447 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 343
+++E CF Q F D +N+T L + + R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160
>Z83237-1|CAB05786.2| 423|Caenorhabditis elegans Hypothetical
protein R06B9.1 protein.
Length = 423
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 121 ACPSSSCHLSCSGKRWPVSETLSLSDPP 38
AC S LS WP S TL L+ PP
Sbjct: 92 ACKDGSNELSAGDYVWPFSYTLPLNVPP 119
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 260 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 355
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 260 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 355
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 260 RCRELS*SAAITFTTYPNTIGSRNGTGICPCI 355
+C + + AA T TT I +NG +C C+
Sbjct: 564 KCVQANNEAATTSTTTSQCIKEKNGETVCKCL 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,855,967
Number of Sequences: 27780
Number of extensions: 247092
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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