Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D04
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical pr...    45   4e-05
AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeri...    45   4e-05
AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    39   0.003
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    39   0.003
AC006795-5|AAK84611.1|  399|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z67883-2|CAA91806.1|   62|Caenorhabditis elegans Hypothetical
           protein K02A4.2 protein.
          Length = 62

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 39/63 (61%)
 Frame = +3

Query: 201 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSC 380
           ++  +A TEQL  EA I+R  VS    +++ +  +++  D L+ G + Q  NPF+EK SC
Sbjct: 1   MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKKSC 59

Query: 381 TVL 389
           +VL
Sbjct: 60  SVL 62


>AF291848-1|AAK55965.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 1 protein.
          Length = 62

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 39/63 (61%)
 Frame = +3

Query: 201 LQQQRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSC 380
           ++  +A TEQL  EA I+R  VS    +++ +  +++  D L+ G + Q  NPF+EK SC
Sbjct: 1   MENIKASTEQLCAEANIQRKKVSEVSKELLDFCEKNKTNDMLVSGPTDQH-NPFQEKKSC 59

Query: 381 TVL 389
           +VL
Sbjct: 60  SVL 62


>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/60 (35%), Positives = 36/60 (60%)
 Frame = +3

Query: 210 QRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSCTVL 389
           QR V + LR +  I+R P++V+ +++ ++    E     LV    +KVNP+ EKS C++L
Sbjct: 7   QRTV-DSLRSQLNIERTPITVSAAELRRFTESQEDP---LVNPIDKKVNPWAEKSKCSML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/60 (35%), Positives = 36/60 (60%)
 Frame = +3

Query: 210 QRAVTEQLRREAAIKRIPVSVAVSDIIKYINEHEQEDCLLVGFSSQKVNPFREKSSCTVL 389
           QR V + LR +  I+R P++V+ +++ ++    E     LV    +KVNP+ EKS C++L
Sbjct: 7   QRTV-DSLRSQLNIERTPITVSAAELRRFTESQEDP---LVNPIDKKVNPWAEKSKCSML 62


>AC006795-5|AAK84611.1|  399|Caenorhabditis elegans Hypothetical
           protein Y50D4B.3 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 579 FFNTSKFNTNIKTQSMNILINNKMRNRIY 493
           FF+   F+  +KTQ+ +I + N+ +NR +
Sbjct: 27  FFDDVPFHWTLKTQNESIQLGNRFKNRYF 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,517
Number of Sequences: 27780
Number of extensions: 189553
Number of successful extensions: 404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)