Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_D02
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu...    27   3.2  
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex...    26   7.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   9.7  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   9.7  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
           Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 473 VNKILICNPNNYKRHFMKXKSSQNNGLR*TSSFFLKEFSLKNILYSP 333
           V +++I  P   +    K KS    G+R T SFF   F  K++L+ P
Sbjct: 71  VFRLIIFRPFRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDP 117


>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
           subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -3

Query: 452 NPNNYKRHFMKXKSSQNNGLR*TSSFFLKEFSLKNILYSPRECC 321
           +P  Y++ F +    Q   +   S    K F L  ++YS  ECC
Sbjct: 77  DPKIYEKPFREQIRIQARDMGSRSFSTAKNFGLLGLIYSGSECC 120


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 260  TFECLLQIVSLSYFVFSH*NCIISKLTNITGECFTG 153
            TF+ L+ + S  Y      NC+I  L + T  C  G
Sbjct: 1325 TFDTLVNLFSEHYDTLMQQNCLIDMLISFTELCKNG 1360


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 479 PCVNKILICNPNNYKRHF-MKXKSSQ 405
           PC NK L+    N KRHF +  KSS+
Sbjct: 154 PCKNKKLLREHMNNKRHFRLDPKSSE 179


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -3

Query: 152 LTCDIFNINHLCNIYFLFFT 93
           L+  +F+I+HL + +FLFF+
Sbjct: 166 LSHSLFHISHLISFHFLFFS 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,359
Number of Sequences: 5004
Number of extensions: 42206
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)