Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C24
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.84 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.5  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    28   1.5  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    28   1.9  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   3.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    26   5.9  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   7.8  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = -2

Query: 403  FLSGSLSEAVALSTVSQWPLLISAQKPSTLSTVFRVTPVSSCKVCNVLVKFDSFKYCCIS 224
            FL+ SL   + L T+S    + ++ K       +R+T V+ CK  +++V  D+     I 
Sbjct: 2310 FLTASLDLTLRLWTLSTNKPIKASLKRVLYGHRYRITCVTVCKAFSIIVSGDAGGNLIIW 2369

Query: 223  LITSADSISMDIVYK 179
             +  A+ +S   VYK
Sbjct: 2370 DLNRAEFVSSLSVYK 2384


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = +1

Query: 619 PSQRPSPGRCPSYRRPVCWHYWARPSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPP 798
           P + P+P +  S R      +   P N     + S P  +       PQ   K  I++ P
Sbjct: 376 PKESPTPSKKRSKRVLWSLKHIVSPGNREKHSLNSTPESIMKKDTKWPQNLAKNNINSEP 435

Query: 799 NCPRSSNSVXSPTWSAR 849
           N P  SN       SAR
Sbjct: 436 NTPTKSNIDTGKAHSAR 452


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 37  CVYFLLCDFIFNKILDINFVTLFI 108
           C+YF+L    F+K+LD  +V  F+
Sbjct: 305 CLYFILSYMFFSKLLDSRYVQRFV 328


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = -2

Query: 403  FLSGSLSEAVALSTVSQWPLLISAQKPSTLSTVFRVTPVSSCKVCNVLVKFDSFKYCCIS 224
            + SG   ++V LS V Q  LL    +  T+ T+ +   + S ++  +LVK       CI 
Sbjct: 851  YFSGKFPDSVKLSPVQQSVLLALGLQYKTIDTLEKEFNLPSNQLLAMLVKLSKKIMKCID 910

Query: 223  LITSAD 206
             I + D
Sbjct: 911  EIETKD 916


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 460 PNSRSSINSNTTCSYNSINFLSGSLSEAVALSTVSQWP--LLISAQKPSTLST 308
           P+S S   +  +  YN+ +FL  S+  + +LS+ S  P  ++ S   P T+S+
Sbjct: 209 PSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSS 261


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 664 PVCWHYWARPSNGNSTRVCSLP 729
           P+C+ Y+  PSN N TR C+ P
Sbjct: 152 PICFLYY--PSNFNYTRCCAQP 171


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 666 RLLALLGQALKWQQHQGLLPPGT-TIDLFRGKAAIRDQEDDLCPTQLSKIIK 818
           RL  L  +  KWQ   G +PP T T+    GK  +    D L P   SK I+
Sbjct: 135 RLFDLSSEYAKWQIRMGAVPPYTITLSHIFGKLDV----DSLPPITESKAIE 182


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 409 INFLSGSLSEAVALSTVS--QWPLLISAQKPSTLSTVFRVTPVSSCKVCNVLVKFDSFKY 236
           INFL   L E   L+ V+   W L ++  K   LS  FRV+ +    +  +++  ++F+Y
Sbjct: 44  INFLLDRLKENSNLTCVNIGYWQLFLNIWKSDKLSGSFRVSAIRRQSLYPIIL--NAFEY 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,534,192
Number of Sequences: 5004
Number of extensions: 74529
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)