Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_C24
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868... 259 2e-69
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 30 2.0
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034... 30 2.7
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18... 30 2.7
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 29 4.7
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 29 4.7
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 29 4.7
01_06_1735 - 39545146-39545451,39545810-39545945,39546072-395462... 29 4.7
11_06_0725 - 26703701-26704669 29 6.2
02_02_0233 + 8105765-8107840 28 8.3
01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409... 28 8.3
>01_03_0084 -
12286416-12286514,12286632-12286683,12286771-12286871,
12287498-12287650,12287703-12287762,12287872-12287998,
12288581-12288708,12289196-12289291,12289473-12289526,
12289603-12289689,12290954-12291057,12291163-12291246,
12291374-12291422,12291523-12291886,12292186-12292226
Length = 532
Score = 259 bits (635), Expect = 2e-69
Identities = 126/221 (57%), Positives = 160/221 (72%)
Frame = +3
Query: 192 SIEIESADVIRLIQQYLKESNXXXXXXXXXXXXGVTLNTVDSVDGFCADINNGHWDTVLK 371
++EIE+ DV++++ Q+ KE++ V+LNTVDS+D F ADIN G WD VL
Sbjct: 7 TLEIEARDVVKIVLQFCKENSLQQTFQTLQNECQVSLNTVDSIDTFIADINAGRWDAVLP 66
Query: 372 ATASLKLPDKKLMELYEQVVLELIELRELGAARSLLRQTHPCLLMKQHETDRYMHLENLL 551
A LKLP KKL +LYEQ+VLE+ ELREL AR++LRQT +MKQ + +RY+ LE+LL
Sbjct: 67 QVAQLKLPRKKLEDLYEQIVLEMAELRELDTARAILRQTQVMGVMKQEQPERYLRLEHLL 126
Query: 552 ARSYFDPREAYGSGGGKERRRAAIAASLAGEVSVVPSSRLLALLGQALKWQQHQGLLPPG 731
R+YFDP EAY KE+RRA I+ ++A EVSVVP SRL+AL+GQALKWQQHQGLLPPG
Sbjct: 127 VRTYFDPNEAY-QESTKEKRRAQISQAIASEVSVVPPSRLMALIGQALKWQQHQGLLPPG 185
Query: 732 TTIDLFRGKAAIRDQEDDLCPTQLSKIIKFGXKSHVECARF 854
T DLFRG AA++ E++ PT LS KFG K+H ECARF
Sbjct: 186 TQFDLFRGTAAMKQDEEETYPTTLSHQTKFGKKTHPECARF 226
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 30.3 bits (65), Expect = 2.0
Identities = 42/187 (22%), Positives = 68/187 (36%), Gaps = 18/187 (9%)
Frame = +3
Query: 207 SADVIRLIQQYLKESNXXXXXXXXXXXXGVTLNTVDSVDGFCADINNGHWDTVLKATASL 386
S +++ LI Q+L E G N + F ++ NG+WD V +
Sbjct: 5 SRELVFLILQFLDEEKFKETVHKLEQESGFYFN----MKYFEDEVINGNWDEVERYLGGF 60
Query: 387 -KLPDKK-----LMELYEQVVLELIELRELGAARSLLRQTHPCLLMKQHETDRYMHLENL 548
K+ D + E+ +Q LE ++ + A +L + + + + L
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEIL--VKDLKVFASFNEELFKEITQL 118
Query: 549 LARSYFDPREAYGSGGGKERRRAAIAASLAGEVSVVP------------SSRLLALLGQA 692
L F E G + RA + L + P SSRL L+ Q+
Sbjct: 119 LTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKSSRLRTLINQS 178
Query: 693 LKWQQHQ 713
L W QHQ
Sbjct: 179 LNW-QHQ 184
>02_02_0528 +
11199799-11200470,11201850-11201951,11202858-11203487,
11204287-11204547
Length = 554
Score = 29.9 bits (64), Expect = 2.7
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Frame = +3
Query: 171 KDVLYTMSIEIESADVIRLIQQYLKESNXXXXXXXXXXXXGVTLNTVDSVDGFCADINNG 350
K+V+ I+ + +R+I + L G+TL++ +V+ F + +G
Sbjct: 10 KEVMVGSKGVIKRDEFVRIITKALYSLGYEKSGAVLEEESGITLHS-PTVNLFRRQVLDG 68
Query: 351 HWDTVLKATASLKLPDKKLME-----LYEQVVLELIEL-RELGAARSLLRQTHP 494
+WD+ + + L D+ +++ + EQ LEL+ +GA R+L + P
Sbjct: 69 NWDSAVVTLKKVGLLDENIVKSAIFLILEQKFLELLRNDNVMGAIRTLQSEITP 122
>02_01_0030 -
183836-183903,183986-184453,184526-184604,184698-185183
Length = 366
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 598 ARSGAALPSQRPSPGRCPSYRRPVCWHYWARPSNGNSTR 714
+++GAA+ P P C + P C W++ S+GN R
Sbjct: 13 SKAGAAVAGGAPRPSTCSVFYPPRC---WSKRSSGNGVR 48
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 585 GSGGGKERRRAAIAASLAGEVSVVPSS 665
G GGG+ R RA+ AA AG +V SS
Sbjct: 358 GGGGGRSRWRASAAAKQAGRAAVSRSS 384
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 671 AGTTGPGPQMATAPGSAPSRHHYRFVPW*SRNKRPRRRSLPHP 799
AG GP P +++ S PSR R P R + + PHP
Sbjct: 2 AGPPGPAPGTSSSSSSLPSRRRRRPPPRLGRRRGGDDQQPPHP 44
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/68 (29%), Positives = 25/68 (36%)
Frame = +1
Query: 595 EARSGAALPSQRPSPGRCPSYRRPVCWHYWARPSNGNSTRVCSLPAPL*ICSVVKPQ*ET 774
E + LPSQRP P R P P H P S+ S+P P + +P
Sbjct: 172 ELKPPPPLPSQRPPPSRSPPPLPPENDHKVDTPGGFISSLFDSMPPPTLDTAAAEPSSSA 231
Query: 775 KKTISAPP 798
PP
Sbjct: 232 SAERREPP 239
>01_06_1735 -
39545146-39545451,39545810-39545945,39546072-39546214,
39546700-39546828,39547198-39547446,39548032-39548403
Length = 444
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 585 GSGGGKERRRAAIAASLAGEVSVVPSS 665
G GGG R+ AA AA+ + E VVP+S
Sbjct: 10 GGGGGGRRKAAAAAAAASREWLVVPAS 36
>11_06_0725 - 26703701-26704669
Length = 322
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 534 HLENLLARSYFDPREAYGSGGGKERRRAAIAASLAG 641
H L ARS E +G+ GGK+++ A AA+ G
Sbjct: 222 HKNVLAARSPVFMAELFGNNGGKDQKEAKAAAAATG 257
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 576 EAYGSGGGKERRRAAIAASLAGEVSVVPSSRLLALLG 686
E G GGG E R A A LAG + + + R L ++G
Sbjct: 590 EQGGGGGGGEGRHLANARRLAGAMMELDADRRLRVIG 626
>01_05_0633 +
23840427-23840562,23840699-23840768,23840846-23840951,
23841086-23841184,23841320-23841442,23841555-23842691
Length = 556
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/109 (22%), Positives = 46/109 (42%)
Frame = +3
Query: 348 GHWDTVLKATASLKLPDKKLMELYEQVVLELIELRELGAARSLLRQTHPCLLMKQHETDR 527
G D L+ +++ ++ + L LY+ + +R LG SL Q E
Sbjct: 328 GSSDNALEKSSAKRIGES-LDSLYKASEGDGTNVRSLGQKLSLKSAKPESKSNVQKENMA 386
Query: 528 YMHLENLLARSYFDPREAYGSGGGKERRRAAIAASLAGEVSVVPSSRLL 674
HL +L S D R+++ GG + + +V+PS++L+
Sbjct: 387 PNHLPSLSGFSNLDKRQSHVISGGNSIGHTNLVQQNSNNENVLPSTQLI 435
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,914,153
Number of Sequences: 37544
Number of extensions: 542755
Number of successful extensions: 2034
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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