Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_C24
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 259 2e-69
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 259 2e-69
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 29 4.2
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 29 4.2
Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 28 7.4
DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping... 28 7.4
AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical ... 28 7.4
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 28 7.4
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 259 bits (635), Expect = 2e-69
Identities = 128/221 (57%), Positives = 163/221 (73%)
Frame = +3
Query: 192 SIEIESADVIRLIQQYLKESNXXXXXXXXXXXXGVTLNTVDSVDGFCADINNGHWDTVLK 371
SIEIES+DVIRLI+Q+LKESN V+LNTVDS+DGFC +I +G+WD VLK
Sbjct: 3 SIEIESSDVIRLIEQFLKESNLHRTLAILQEETNVSLNTVDSIDGFCNEITSGNWDNVLK 62
Query: 372 ATASLKLPDKKLMELYEQVVLELIELRELGAARSLLRQTHPCLLMKQHETDRYMHLENLL 551
SLKLP KKL++LYE V++EL+ELREL AR + RQT P +L+KQ + DR+ LE+L+
Sbjct: 63 TVQSLKLPAKKLIDLYEHVIIELVELRELATARLVARQTDPMILLKQIDPDRFARLESLI 122
Query: 552 ARSYFDPREAYGSGGGKERRRAAIAASLAGEVSVVPSSRLLALLGQALKWQQHQGLLPPG 731
R YFD +E YG KE+RR+ IA +L+ EV VV SRLL+LLGQ+LKWQ HQGLLPPG
Sbjct: 123 NRPYFDGQEVYGD-VSKEKRRSVIAQTLSSEVHVVAPSRLLSLLGQSLKWQLHQGLLPPG 181
Query: 732 TTIDLFRGKAAIRDQEDDLCPTQLSKIIKFGXKSHVECARF 854
T IDLFRGKAA ++Q ++ PT +++ IKF KS+ E A F
Sbjct: 182 TAIDLFRGKAAQKEQIEERYPTMMARSIKFSTKSYPESAVF 222
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 259 bits (635), Expect = 2e-69
Identities = 128/221 (57%), Positives = 163/221 (73%)
Frame = +3
Query: 192 SIEIESADVIRLIQQYLKESNXXXXXXXXXXXXGVTLNTVDSVDGFCADINNGHWDTVLK 371
SIEIES+DVIRLI+Q+LKESN V+LNTVDS+DGFC +I +G+WD VLK
Sbjct: 3 SIEIESSDVIRLIEQFLKESNLHRTLAILQEETNVSLNTVDSIDGFCNEITSGNWDNVLK 62
Query: 372 ATASLKLPDKKLMELYEQVVLELIELRELGAARSLLRQTHPCLLMKQHETDRYMHLENLL 551
SLKLP KKL++LYE V++EL+ELREL AR + RQT P +L+KQ + DR+ LE+L+
Sbjct: 63 TVQSLKLPAKKLIDLYEHVIIELVELRELATARLVARQTDPMILLKQIDPDRFARLESLI 122
Query: 552 ARSYFDPREAYGSGGGKERRRAAIAASLAGEVSVVPSSRLLALLGQALKWQQHQGLLPPG 731
R YFD +E YG KE+RR+ IA +L+ EV VV SRLL+LLGQ+LKWQ HQGLLPPG
Sbjct: 123 NRPYFDGQEVYGD-VSKEKRRSVIAQTLSSEVHVVAPSRLLSLLGQSLKWQLHQGLLPPG 181
Query: 732 TTIDLFRGKAAIRDQEDDLCPTQLSKIIKFGXKSHVECARF 854
T IDLFRGKAA ++Q ++ PT +++ IKF KS+ E A F
Sbjct: 182 TAIDLFRGKAAQKEQIEERYPTMMARSIKFSTKSYPESAVF 222
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Frame = -2
Query: 472 DLAAPNSRSSINSNTTCS---YNSINFLSGSLSEAV----ALSTVSQWPLLISAQKPSTL 314
D++ ++ I S S YN + L + E + +LS + Q ++I P
Sbjct: 1059 DISFDEAKELIESEPPLSDDDYNPLRGLKKGIKEIILNRESLSKLEQGHVIIQTFPPPLA 1118
Query: 313 ST-VFRVTP---VSSCKVCNVLVKFDSFKYCCI 227
+F V P ++ CK CN + D F+ C+
Sbjct: 1119 PKFLFNVMPSITIAQCKGCNKVFDLDDFEMACL 1151
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Frame = -2
Query: 472 DLAAPNSRSSINSNTTCS---YNSINFLSGSLSEAV----ALSTVSQWPLLISAQKPSTL 314
D++ ++ I S S YN + L + E + +LS + Q ++I P
Sbjct: 1059 DISFDEAKELIESEPPLSDDDYNPLRGLKKGIKEIILNRESLSKLEQGHVIIQTFPPPLA 1118
Query: 313 ST-VFRVTP---VSSCKVCNVLVKFDSFKYCCI 227
+F V P ++ CK CN + D F+ C+
Sbjct: 1119 PKFLFNVMPSITIAQCKGCNKVFDLDDFEMACL 1151
>Z82269-7|CAB05204.2| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 730 APL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVXSP 834
A L IC+ +KP + AP NCP S SP
Sbjct: 466 AVLGICTPLKPGASLNEFSGAPQNCPMISEEAGSP 500
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 730 APL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVXSP 834
A L IC+ +KP + AP NCP S SP
Sbjct: 489 AVLGICTPLKPGASLNEFSGAPQNCPMISEEAGSP 523
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -2
Query: 478 SKDLAAPNSRSSINSNTTCSYNSINFLSGSLSEAVALSTVSQWPLLISAQKPSTLSTVFR 299
S AA +S S +S+++ S ++ + S + A + ST S S+ S+ S+
Sbjct: 57 SSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTSSDSSTTSSNSSSSTSSSDS 116
Query: 298 VTPVSSCKVCNVLVKFDSFKYC 233
+ VSS DSF C
Sbjct: 117 TSVVSSTSSSTTTTCVDSFSTC 138
>DQ143943-1|AAZ73241.1| 770|Caenorhabditis elegans RNA-decapping
protein protein.
Length = 770
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 730 APL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVXSP 834
A L IC+ +KP + AP NCP S SP
Sbjct: 450 AVLGICTPLKPGASLNEFSGAPQNCPMISEEAGSP 484
>AL021488-8|CAJ43919.1| 786|Caenorhabditis elegans Hypothetical
protein F52G2.1b protein.
Length = 786
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 730 APL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVXSP 834
A L IC+ +KP + AP NCP S SP
Sbjct: 466 AVLGICTPLKPGASLNEFSGAPQNCPMISEEAGSP 500
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 730 APL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVXSP 834
A L IC+ +KP + AP NCP S SP
Sbjct: 489 AVLGICTPLKPGASLNEFSGAPQNCPMISEEAGSP 523
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,964,934
Number of Sequences: 27780
Number of extensions: 441641
Number of successful extensions: 1201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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