Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C24
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    28   0.095
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   8.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 0.095
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -2

Query: 445 SINSNTTCSYNSINFLSGSLSEAVALSTVSQWPLLISAQKPSTLSTVFRVTPVSSCK 275
           S +++TTCS +++   +G   +    S  SQ P+L   +KP   S+    +P++S K
Sbjct: 285 SSSASTTCSGHTVRCFTGGPRK----SHESQCPMLQKLEKPVLSSSTTTTSPMTSTK 337



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 75  NFRH*FCDIVYYICKNINLQIR 140
           +FR  F +I+Y+ C N+N  +R
Sbjct: 433 DFRKPFREILYFRCSNLNHMMR 454


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 604 SGAALPSQRPSPGRCPSYRRPVCWHYWARPSNGNSTR 714
           +G +  S+   P  CP+   PV  H W +   G+S R
Sbjct: 220 NGLSTESKADLPLLCPAQGFPVPVHRWYKFIEGSSRR 256


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 799 WVGQRSSSWS 770
           W+GQ+ +SWS
Sbjct: 759 WLGQQGNSWS 768


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 710 PGSAPSRHHYRFVPW 754
           P    +RH+Y FVP+
Sbjct: 467 PEKTANRHYYAFVPF 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,380
Number of Sequences: 438
Number of extensions: 5538
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)