Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C23
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664...    32   0.49 
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504...    31   0.86 
03_02_0339 - 7623897-7625837                                           28   8.0  

>09_06_0328 +
           22365308-22365415,22365743-22366018,22366166-22366417,
           22366542-22366939,22367028-22368021,22368199-22368409,
           22368515-22368749,22368874-22368996,22369190-22369310,
           22369416-22369625
          Length = 975

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 493 ICRGSLDLRATHIWNISNGICQKVVR 570
           +  GSLD    HIW+++NGIC  V+R
Sbjct: 140 LASGSLD-NTVHIWSMANGICTAVLR 164


>03_02_0020 -
           5045900-5046211,5046233-5046290,5046604-5047242,
           5048475-5048515,5048672-5048728,5048952-5049140
          Length = 431

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 414 HTLLKCVHIYKKHKVQYEIRTYFRFIHMQRLTGSTCDTYLEYIERNLPEGCALKV 578
           + +L   H++K  +  +EIRT+ R I +   T  T D+ ++     LP G  ++V
Sbjct: 378 YCVLNSPHVHKDSRFHFEIRTHQRLIDIMYPTAQTIDSLMQL---QLPAGVDVEV 429


>03_02_0339 - 7623897-7625837
          Length = 646

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 291 LILLFYITCPIPQEEPLVQQHEVAPLYW 208
           LILL YI   +P+ E L Q   +A L W
Sbjct: 586 LILLCYIALHVPENEELAQAGVLAVLLW 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,006
Number of Sequences: 37544
Number of extensions: 286884
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)