Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C15
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0646 - 30832201-30832838,30833643-30833838,30833975-308341...    28   6.9  

>01_06_0646 -
           30832201-30832838,30833643-30833838,30833975-30834126,
           30834258-30834303,30834992-30835216,30835374-30835414,
           30835705-30835834,30835951-30836019,30836254-30836307,
           30836389-30836547,30836854-30836991,30837079-30837141,
           30837225-30837264,30837369-30837415,30838062-30838373
          Length = 769

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -2

Query: 177 SVVGGLRSLALAPTWSKRQLSFADQSRQRTRINTSTKARP 58
           S  GG++   +AP+WS R L+F   SR + +   +  ARP
Sbjct: 706 STAGGVKR-DVAPSWSSRLLAFRSFSRDK-KAKATVDARP 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,060,840
Number of Sequences: 37544
Number of extensions: 322512
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)