Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_C14
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 116 2e-26
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 112 3e-25
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13... 42 7e-04
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741... 41 0.001
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 41 0.001
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 31 0.79
01_03_0065 + 12167808-12169148 28 7.3
09_01_0068 - 1008203-1008280,1008406-1008651 28 9.7
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 116 bits (279), Expect = 2e-26
Identities = 53/86 (61%), Positives = 66/86 (76%)
Frame = +2
Query: 77 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 256
MKLVRFLMKL++ETVTIELKNG+ VHGTITGVD++MNTHLK VK+TLK + + + LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSV 60
Query: 257 RGNNIRYYXXXXXXXXXXXXIDDTPK 334
RGNNIRYY ++DTP+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPR 86
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 112 bits (270), Expect = 3e-25
Identities = 51/83 (61%), Positives = 65/83 (78%)
Frame = +2
Query: 86 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 265
+RFLMKL++ETVTIELKNG+VVHGTITGVD++MNTHLK VK+TLK + + L+ LS+RGN
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 225
Query: 266 NIRYYXXXXXXXXXXXXIDDTPK 334
NIRYY ++DTP+
Sbjct: 226 NIRYYILPDSLNLETLLVEDTPR 248
>02_01_0022 -
135655-135717,137426-137482,137559-137678,137762-137920
Length = 132
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/64 (32%), Positives = 35/64 (54%)
Frame = +2
Query: 86 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 265
V+ L + + VT+ELK G V G++ + N L + T K+ + QLE + IRG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 266 NIRY 277
+R+
Sbjct: 69 RVRF 72
>03_02_0318 +
7417361-7417519,7417638-7417690,7417770-7417836,
7417925-7417981,7420005-7420067
Length = 132
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 86 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 265
V+ L + + VT+ELK G V G + + N L + T K+ + QLE + IRG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 266 NIRY 277
+R+
Sbjct: 69 RVRF 72
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 125 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIRY 277
+ELKNG +G + D MN HL+ V T K+ ++ ++ IRGN I+Y
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKY 68
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 77 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 211
M + +L + VT+ELKN + GT+ VD +N L+ +V
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRV 45
>01_03_0065 + 12167808-12169148
Length = 446
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -1
Query: 545 NKKHHENLIQSQISDLTYCDQVWLKIRFLSTGVRDLGLHDRLWGLRGHLGLCHDH 381
NK +E S L C + +L+ RD+ + R W + LCHD+
Sbjct: 353 NKLANEEEAAKFFSQLHACSYINYDEHYLAPVFRDINTYCRRWWPKRRARLCHDY 407
>09_01_0068 - 1008203-1008280,1008406-1008651
Length = 107
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 112 RDGHYRVEKRQCRSWNNYRGGCRYEHT 192
RD H R KRQ R W RGG Y T
Sbjct: 40 RDDHERQHKRQLRGW-RARGGGSYRAT 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,438
Number of Sequences: 37544
Number of extensions: 283184
Number of successful extensions: 557
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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