Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C10
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.40 
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    29   1.2  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    29   1.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   1.2  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    27   3.7  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    27   4.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    27   4.9  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   8.6  

>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 344 RNTCGAPAVPPLSRQHPSCRDRARPTLST 430
           R   GAPA+P L  +HPS +   R T ST
Sbjct: 418 RKPTGAPAIPKLPPKHPSRQPTVRATPST 446


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 744 VQTDQSRQINSEVLAPLVRSLFYLRSLNFSGYYAIRYCFYFF 619
           V+ + S Q N+E+L   +  +  +  +NF  +Y  R C YF+
Sbjct: 11  VEEEVSSQTNTEILLFALVIILSVIFINFFFFYLCRCCVYFY 52


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +1

Query: 568 DNLQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQRSDKRSKNFRVNLAGLIGLHV 747
           DN+QD+S F + ++  R  +E+    I+  E  ASE+     ++S     NL+G IG + 
Sbjct: 658 DNVQDVSPFLKGEEMKRWVMES---EIVFNEKIASEIGTILGRKSYGKITNLSG-IGSNA 713

Query: 748 NGEG 759
           N  G
Sbjct: 714 NHNG 717


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 726  RQINSEVLAPLVRSLFYLRSLNFSGYYAIRYCFYFFTQRLVVFVKF 589
            R+I S+V+   VR L+Y +S    GYY  R         L+V +K+
Sbjct: 1046 REIGSKVVDDRVRGLYYAQSQVLFGYYRSRLKGSRCINDLLVIIKY 1091


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +1

Query: 403 RPRSSYSLYTVSQAYHYLFRQHEKSLQPLIDEYRQT--TDEQR-SACPPSSLLGNNWFDN 573
           + +++   Y   +  +Y+  Q ++   P +D+      +DE   S  P  S+L    F  
Sbjct: 89  KQQNNLDFYACIKLVNYIRSQVKEGKTPDLDKLSDILRSDEYMISVLPDDSVL----FSL 144

Query: 574 LQDLSEFYEDDQALRKEVETITDRIIAAEVKASEVKQR 687
             +L   +EDD  L  EVE   D    AE+K  +++ +
Sbjct: 145 GDELDSDFEDDNTLEIEVENPADVSKDAEIKKLKLQNQ 182


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +1

Query: 493 DEYRQTTDEQRSACPPSSLLGNNWFDNLQDLSEFYEDDQALRK 621
           D    ++D + +   P    G N F  L       EDDQAL K
Sbjct: 436 DTQETSSDSKLAEVKPKGKNGGNRFHELDPFVYIKEDDQALEK 478


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 598 EDDQALRKEVETITDRIIAAEVKASEVKQRSD 693
           E++  + K VE  TD++ + EVK  EV + ++
Sbjct: 229 EENVTVTKPVEVATDQVESKEVKKKEVSETTE 260


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 595 YEDDQALRKEVETITDRIIAAEVKASEVKQRSDKR 699
           YE D +   E ET+T+++   ++K +E  Q+ D++
Sbjct: 263 YESDSSNEDESETVTEKL--GDIKINEEVQQKDEQ 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,025
Number of Sequences: 5004
Number of extensions: 62720
Number of successful extensions: 231
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)