Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C08
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832...    38   0.006
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353...    35   0.057
12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771...    33   0.30 
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512...    30   1.6  
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836...    29   3.7  
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334           28   6.5  

>07_01_0987 +
           8320205-8320472,8321549-8321690,8321773-8321893,
           8322190-8322264,8322784-8322846,8322934-8323086
          Length = 273

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/40 (40%), Positives = 28/40 (70%)
 Frame = +3

Query: 219 KELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           ++LSEL ++   LQ  A +F+++  K++RK W QN+K+ L
Sbjct: 208 EKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMKIKL 247


>03_01_0459 +
           3533718-3533916,3535009-3535150,3535290-3535410,
           3535513-3535575,3535677-3535823
          Length = 223

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 219 KELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           +++  L ++ + L+  A  F +   K++RK WW+N+KM L
Sbjct: 160 EKIELLVDKTEDLRSQAQDFRKAGTKIRRKMWWENMKMKL 199


>12_02_1272 +
           27475302-27475491,27476792-27476876,27477076-27477196,
           27477443-27477586
          Length = 179

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 267 AAQFEQQAGKLKRKYWWQNLKMML 338
           AA F QQ  +++RK W+QN+K+ L
Sbjct: 133 AADFRQQGTRVRRKMWYQNMKIKL 156


>07_01_0680 +
           5128023-5128212,5128629-5128667,5129496-5129637,
           5129727-5129847,5129951-5130013,5130114-5130203,
           5130572-5130619,5131114-5131260
          Length = 279

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 267 AAQFEQQAGKLKRKYWWQNLKMML 338
           A  F QQ  K++RK W QN+K+ L
Sbjct: 232 AQDFRQQGTKVRRKMWLQNMKIKL 255


>02_05_1125 +
           34282559-34282796,34283247-34283437,34283540-34283629,
           34283630-34283793,34284139-34284352
          Length = 298

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 LSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKM 332
           L  L ++   +Q    +F++QA + +   WW+N+K+
Sbjct: 192 LELLVDKTATMQGNTMRFKRQARRFRNTVWWRNVKL 227


>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
          Length = 197

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 225 LSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKM 332
           L  L ++   +Q    +F++QA + +   WW+N+K+
Sbjct: 156 LDMLVDKTANMQGNTIRFKRQARRFRNTTWWRNVKL 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,751
Number of Sequences: 37544
Number of extensions: 253681
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)