Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C08
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    68   8e-12
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      68   8e-12
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      68   8e-12
Z74472-1|CAA98946.2|  118|Caenorhabditis elegans Hypothetical pr...    58   5e-09
AF239889-1|AAF45301.1|  118|Caenorhabditis elegans synaptobrevin...    58   5e-09
AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical...    31   1.1  
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass...    29   2.5  
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass...    29   2.5  
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    29   4.4  
U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z78416-2|CAB01677.2|  583|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = +3

Query: 201 KFWKETKELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           K  +  ++LS+LD+RADALQ GA+QFE+ A  LKRKYWW+N+KMM+
Sbjct: 44  KVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMMI 89



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 101 QGGSSA-PRVSDKRLAQTQAKXXXXXXXXXXXXXXXLERDQ 220
           QGGS   PR S+KRL QTQA+               LERDQ
Sbjct: 10  QGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVEKVLERDQ 50


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = +3

Query: 201 KFWKETKELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           K  +  ++LS+LD+RADALQ GA+QFE+ A  LKRKYWW+N+KMM+
Sbjct: 44  KVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMMI 89



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 101 QGGSSA-PRVSDKRLAQTQAKXXXXXXXXXXXXXXXLERDQ 220
           QGGS   PR S+KRL QTQA+               LERDQ
Sbjct: 10  QGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVEKVLERDQ 50


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 28/46 (60%), Positives = 38/46 (82%)
 Frame = +3

Query: 201 KFWKETKELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           K  +  ++LS+LD+RADALQ GA+QFE+ A  LKRKYWW+N+KMM+
Sbjct: 44  KVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIKMMI 89



 Score = 31.5 bits (68), Expect = 0.63
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 101 QGGSSA-PRVSDKRLAQTQAKXXXXXXXXXXXXXXXLERDQ 220
           QGGS   PR S+KRL QTQA+               LERDQ
Sbjct: 10  QGGSQGGPRPSNKRLQQTQAQVDEVVGIMKVNVEKVLERDQ 50


>Z74472-1|CAA98946.2|  118|Caenorhabditis elegans Hypothetical
           protein F23H12.1 protein.
          Length = 118

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/46 (47%), Positives = 36/46 (78%)
 Frame = +3

Query: 201 KFWKETKELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           K  +   +L+ LD+RA+ LQ+GA+QF+Q +  L++KYWWQN++MM+
Sbjct: 54  KVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIRMMI 99


>AF239889-1|AAF45301.1|  118|Caenorhabditis elegans
           synaptobrevin-like protein protein.
          Length = 118

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 22/46 (47%), Positives = 36/46 (78%)
 Frame = +3

Query: 201 KFWKETKELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           K  +   +L+ LD+RA+ LQ+GA+QF+Q +  L++KYWWQN++MM+
Sbjct: 54  KVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIRMMI 99


>AC084158-24|AAM15622.1|  245|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.6 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 219 KELSELDNRADALQHGAAQFEQQAGKLKRKYWWQNLKMML 338
           + L  ++NR +AL+  A  F+  A +++R +  +NLK  L
Sbjct: 182 ERLENMENRTEALRTSATSFKSTARRVQRHFCQKNLKWTL 221


>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform b protein.
          Length = 1321

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 338 NYRCYWCSVAYYHYCVGNV 394
           +YRC WC    +  C+GN+
Sbjct: 182 DYRCIWCGCCVHDTCIGNL 200


>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 137, isoform a protein.
          Length = 1372

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 338 NYRCYWCSVAYYHYCVGNV 394
           +YRC WC    +  C+GN+
Sbjct: 182 DYRCIWCGCCVHDTCIGNL 200


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 335  VNYRC-YWCSVAYYHYCVGNVRFVIPC 412
            + Y+C + CS+A Y +C G   F  PC
Sbjct: 3683 LEYKCRFCCSIAVY-FCFGTTHFCAPC 3708


>U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B10.2 protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 389 CPHNNDNKQHCTNSTYN*HHLQILPPIL 306
           C  N D K HC   T   HH  + P +L
Sbjct: 240 CIKNEDGKLHCLGKTKGRHHPDVEPSVL 267


>Z78416-2|CAB01677.2|  583|Caenorhabditis elegans Hypothetical
           protein C23H4.2 protein.
          Length = 583

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 314 VAEFEDDVNYRCYWCSVAYYHYCVGNVRFVIP 409
           +AE+ DD N++  + SV +    +GN+RF  P
Sbjct: 31  MAEWSDDANHKFTFKSVPFAKPPIGNLRFAPP 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,453,319
Number of Sequences: 27780
Number of extensions: 247812
Number of successful extensions: 586
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)