Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C06
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    27   3.1  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    25   7.2  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 639 FFNDTFKHL*NKSIDIIFKAVVPSL 565
           F ND F HL  +++DII   + P+L
Sbjct: 429 FNNDYFVHLVEENVDIILPIIYPAL 453


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 393 YFCVLREESDIDREFDKTLYDRIKGLEKE 479
           Y CV++   D+  +FD+ + +++  L K+
Sbjct: 57  YVCVIKTHIDVVEDFDQDMVEKLVALGKK 85


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 645 LTFFNDTFKHL*NKSIDIIFKAVVPSLPS 559
           L  +N +F H+  +S+D++   V P+LP+
Sbjct: 414 LNLYNASFGHVVLRSLDVLTILVPPALPA 442


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +3

Query: 342 PLYQPYVVIGSVAIFMLYFCV-LREESDIDREFDKTLYDRIKGLEKEQL 485
           P  Q +V I       +YF V LR    I   FD    ++I GLE+  L
Sbjct: 312 PFGQTFVEIEDPFCSFVYFYVSLRVPCSIQLFFDSVPLEKINGLEQRAL 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,659
Number of Sequences: 5004
Number of extensions: 42524
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)