Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C05
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0963 - 9661699-9661760,9662095-9662818,9662860-9663265,966...    28   4.9  
07_03_0451 + 18340166-18340533,18340576-18341006,18343057-183431...    28   6.5  
01_06_0639 + 30772804-30772904,30773386-30775675                       27   8.5  

>08_01_0963 -
           9661699-9661760,9662095-9662818,9662860-9663265,
           9663488-9665037
          Length = 913

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 228 LIPLEVS*PVLYPSTPMLSLSCLMTTASASGPXWGSDSYGDEESDNEER 82
           +I LE + P LY +T +L+    +         W S++Y DE+  N ER
Sbjct: 589 IIKLERATP-LYSTTSLLTYKKHLKVLYLCCSGWTSEAYSDEDVSNNER 636


>07_03_0451 +
           18340166-18340533,18340576-18341006,18343057-18343184,
           18343329-18343958,18344761-18345480
          Length = 758

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 222 PLEVS*PVLYPSTPMLSLSCLMTTASASGPXWGSD 118
           PLEV  P +YP   +LS+S ++ T   SG  W  D
Sbjct: 280 PLEVLEPYIYPYRQLLSIS-ILHTFHFSGGKWLKD 313


>01_06_0639 + 30772804-30772904,30773386-30775675
          Length = 796

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +2

Query: 161 RQDNDNIGVEGYNTGYETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTY 328
           R+  +N GV GY TG+   +G     +G   N     +A + R ++ Y GP G +Y
Sbjct: 221 RRQGNNSGVSGYGTGHH-YHGSDTYRSGY--NTQNNQQAYDSR-QYGY-GPSGQSY 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,251,521
Number of Sequences: 37544
Number of extensions: 196055
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)