Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_C03
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 143 1e-34
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 142 4e-34
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 124 1e-28
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 122 4e-28
02_05_0052 - 25433204-25434151 35 0.100
03_02_0167 - 6088818-6089870 32 0.70
07_03_0376 + 17437308-17437536,17438049-17438149,17438246-174384... 30 2.1
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 2.1
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 30 2.8
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 29 5.0
04_04_0680 - 27217563-27220088 29 5.0
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 29 5.0
05_01_0382 + 2985526-2986659 29 6.6
07_03_0604 + 19903654-19904598 28 8.7
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 8.7
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 143 bits (347), Expect = 1e-34
Identities = 93/252 (36%), Positives = 129/252 (51%), Gaps = 2/252 (0%)
Frame = +2
Query: 134 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 313
+ + +VG RTP G F G + SAT+L +IA ALK A V PA V + G V+S++
Sbjct: 9 RDVCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGNVLSANL 68
Query: 314 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 493
G R AAL AGIP +N++C SG ++ + +AQ IL G I VAGG+E+MS
Sbjct: 69 --GQAPARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQSILLGINDIVVAGGMESMS 126
Query: 494 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 673
AP + R G+ G + + L GL D Y MG AE +TR++ D YA
Sbjct: 127 NAPKYIAEARKGSRFGHDTLVDGMLKDGLWDVYGDFAMGNCAELCADNHALTREDQDAYA 186
Query: 674 LQSQQKWKTANDAGVFKAXIEPVSLTIXRKEVKVXV-XXHPRPXTTLXGLXKLPPVFKKE 850
+QS ++ A ++G F I P+ + + R + V V L KL P FK+
Sbjct: 187 IQSNERGIAARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKLKKLRPSFKEN 246
Query: 851 -GLXTAGTASGI 883
G TAG AS I
Sbjct: 247 GGTVTAGNASSI 258
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 142 bits (343), Expect = 4e-34
Identities = 86/249 (34%), Positives = 126/249 (50%)
Frame = +2
Query: 134 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 313
+ + IVG RTP G G + AT+L ++A AL+ A V PA V + +G V+S++
Sbjct: 15 RDVCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSANL 74
Query: 314 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 493
G R AAL AG+P P +N++C SG ++++ +AQ I G + VAGG+E+MS
Sbjct: 75 --GQAPARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQTIQLGMHDVVVAGGMESMS 132
Query: 494 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 673
AP V R G+ G + + L GL D Y PMGM AE Q I+R+E D YA
Sbjct: 133 NAPKYVAAARRGSRFGHDVLIDGMLKDGLWDVYNDFPMGMCAELCADQHSISREEQDLYA 192
Query: 674 LQSQQKWKTANDAGVFKAXIEPVSLTIXRKEVKVXVXXHPRPXTTLXGLXKLPPVFKKEG 853
+QS ++ A D+G F I PV ++ R + + V +LP + +G
Sbjct: 193 IQSNERAIAARDSGTFSWEIAPVEISSGRGKPPLIVDKDESLAKCTSLPSRLPSKIRSDG 252
Query: 854 LXTAGTASG 880
SG
Sbjct: 253 AAAIVLVSG 261
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 124 bits (299), Expect = 1e-28
Identities = 86/261 (32%), Positives = 124/261 (47%), Gaps = 7/261 (2%)
Frame = +2
Query: 122 SASVKGIFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQV 298
SA + +V A RTP G F++T +L T+ L ++P ++ +VVG V
Sbjct: 43 SAYGDDVVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTV 102
Query: 299 ISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGG 478
+ I R AA AG+P+ PV +NR C SG Q++ + A I G I + G
Sbjct: 103 LGPGSQRAIEC-RAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 161
Query: 479 VENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDE 658
+E+MS A+G + C LPMG+T+E + ++G+TR E
Sbjct: 162 LESMSV-----------NAMGWEGQVNPKVNEVQKAQDCLLPMGITSENVAHRYGVTRQE 210
Query: 659 VDNYALQSQQKWKTANDAGVFKAXIEPVSLTI------XRKEVKVXVXXHPRPXTTLXGL 820
D A +S ++ A AG FK I PV I K+V + V RP TT GL
Sbjct: 211 QDQAAAESHRRAAAATAAGKFKDEIVPVPTKIVDPKTGEEKKVVISVDDGIRPGTTASGL 270
Query: 821 XKLPPVFKKEGLXTAGTASGI 883
KL PVF+K+G TAG +S +
Sbjct: 271 AKLKPVFRKDGTTTAGNSSQV 291
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 122 bits (294), Expect = 4e-28
Identities = 88/255 (34%), Positives = 127/255 (49%), Gaps = 7/255 (2%)
Frame = +2
Query: 140 IFIVGAKRTPF-GTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQT 316
+ IV A RT + G F++T A +L + + ++P++V +VVG V++
Sbjct: 51 VVIVAAYRTAICKSKRGGFKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGSQ 110
Query: 317 DGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQ 496
I R AA AG P P++ +NR C SG Q++ N A +I G I +A G+E+M+
Sbjct: 111 RAIEC-RMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMT- 168
Query: 497 APFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYAL 676
V VR + L++ D C LPMG+T+E + +FGITR E D A+
Sbjct: 169 ----VNQVRLDGQVNPKV----ELFSQARD--CLLPMGLTSENVAKRFGITRMEQDQAAV 218
Query: 677 QSQQKWKTANDAGVFKAXIEPVSLTI------XRKEVKVXVXXHPRPXTTLXGLXKLPPV 838
+S +K A +G FK I PV I KE+ V RP T+L L KL P
Sbjct: 219 ESHRKAAAAAASGKFKEEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGTSLAVLSKLKPA 278
Query: 839 FKKEGLXTAGTASGI 883
F K+G TAG AS +
Sbjct: 279 FSKDGTTTAGNASQV 293
>02_05_0052 - 25433204-25434151
Length = 315
Score = 34.7 bits (76), Expect = 0.100
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = +2
Query: 116 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 295
+ SA+ G+ + GT G+F N ++ ELQ I +G + G+SP Q +V G
Sbjct: 217 VTSAARGGVEVKEGDVVVAGT-DGLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAGF 273
Query: 296 VISSSQTDGIYTP 334
+S T G TP
Sbjct: 274 AYEASTTMGRDTP 286
>03_02_0167 - 6088818-6089870
Length = 350
Score = 31.9 bits (69), Expect = 0.70
Identities = 31/112 (27%), Positives = 52/112 (46%)
Frame = +1
Query: 292 PSHLFITN*RNLHATSRGAQSWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSS 471
P L ++ R ATS+G + SS + GAR ++T+RL+ + + R QDL
Sbjct: 233 PPRLDMSFGRFTFATSQGVEEEGSSYDVGARGKRTVRLFVAAEGKPMYA-AGRGMQDLLE 291
Query: 472 GGSREHVASALRGQKREVRHGSGHQLRLRRHPLGRTLGLILRTPHGHDRREA 627
G +A +R + R GS +L R + + + RTP ++ +A
Sbjct: 292 SGGGLPLAVTVRARSRYRMVGSLVRLSYRHD--AQCVVRLRRTPRRNNAIDA 341
>07_03_0376 +
17437308-17437536,17438049-17438149,17438246-17438463,
17438544-17438901
Length = 301
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 200 TSATELQTIATVGALKEAGV--SPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEK 373
T A L +A + A AG SP S V + S + P+H L A Q
Sbjct: 10 TVAGLLVAVAAIMAASPAGAQPSPGYYPSSVHRAMAFSRDYTNKWGPQHQTLSAD--QSS 67
Query: 374 PVLGINRLCGSGFQS 418
+ +++ CGSGF+S
Sbjct: 68 LTIWLDKTCGSGFKS 82
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 352 SWYSSREAGARHQQTMRLWFPIDREQRSGHFDRRSQDLSSGGSRE 486
SWYSS AG ++ F I R G ++R++ + GG RE
Sbjct: 1353 SWYSSNSAGTQN-------FTIAGSSRPGEWNRKNNNRGQGGGRE 1390
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 356 GIPQEKPVLGIN-RLCGSGFQSIVNSAQDILTGAAKISVAGGVENMSQAPFAVRNVR 523
G+P E P + R C S S A++ A++ G SQA +AV N +
Sbjct: 244 GVPGEAPAIAAEIRDCASASSSASGHAKETAAELARLDAMGDAAKGSQARWAVSNAK 300
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 448 RRSQDLSSGGSREHVASALRGQKREVRHGSGHQLRLRRHP 567
RR+ L G +H AL +K V+HG H+ L HP
Sbjct: 433 RRNPKLRIGLYSQHFCDALPEEKSPVQHGQCHRECLDTHP 472
>04_04_0680 - 27217563-27220088
Length = 841
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 533 ALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKLGAQFGITRDEVDNYA 673
A+G NY +++ LW GLS S L G ++ A F + ++ N+A
Sbjct: 720 AIGHNY-YDEALWEGLSRSIPSLQKGPDKDE-EAGFAVDASKMGNFA 764
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 332 PRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILT 448
PR LK P+E I+R+C Q I++S Q I +
Sbjct: 249 PRTTKLKYRYPRESDHKNISRICREHLQEIISSQQKIFS 287
>05_01_0382 + 2985526-2986659
Length = 377
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +1
Query: 520 EVRHGSGHQL---RLRRHPLGRTLGLILRTPHGHDRREARSPVRNHQRR 657
E R G H+L + R PLGR + ++ PH E + +R H R
Sbjct: 267 EHRGGGDHRLIMLNMTREPLGRAISVLCIHPHAAPAAEMQCELRLHVSR 315
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 8.7
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = +1
Query: 364 SREAGARHQQTMRL-WFPIDREQRSGH--FDRRSQDLSSGGSRE-HVASALRGQKREVRH 531
S+ G R ++ R+ P+ R +R H RR ++ SR H GQ R R
Sbjct: 77 SKAPGGRRRRPRRVEGAPVHRARRLHHRRVRRRRVHVAVRSSRRRHGRRGEEGQGRRPRV 136
Query: 532 GSGHQLRLRRHPLGRTLGLILRTPHGHDRREA 627
+G QLR RR G G + G +A
Sbjct: 137 PAGAQLRRRRRAHGHGHGQVRAVRDGDGEGDA 168
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 525 SARLWAPTTPSKTPSGPDSRTHTA 596
S+R+ APT+PS PS P S + ++
Sbjct: 100 SSRISAPTSPSSAPSSPSSSSSSS 123
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,323,657
Number of Sequences: 37544
Number of extensions: 515137
Number of successful extensions: 1720
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -