Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C01
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    29   0.61 
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    29   0.81 
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    26   7.5  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   7.5  

>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = -3

Query: 265 YNLYLNDVRAK*IKIIAFRFLLRLRPDLAS--RRWELRSGLDNINRIGRCSKETQNRYEQ 92
           Y+L+ N++R   +    F F  +   +  S  +  EL++ LDN+N I +   E Q R+  
Sbjct: 18  YSLFKNNLRVSRLPESRFVFSPKEEINCQSLLQGPELKTALDNLNFIHKQKFEHQFRHGY 77

Query: 91  HRRHRADH--HDFYFKSAFTHANVHGEYSF 8
            + H   H  HD    +++ H   H +  F
Sbjct: 78  WKLHPHPHHQHDSIIPASWIHDTPHMKLVF 107


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 16/44 (36%), Positives = 29/44 (65%)
 Frame = +2

Query: 254 IEIVNKKCNLLNETIERYTEIWQRQYMIVKRYNNISTHVEPHDI 385
           I+I+NK+  LL  + +R TE++QR+  I+K  ++    V+ H+I
Sbjct: 195 IKIINKRKILLTSSEKRATEMFQREIDILKSLHHPGV-VQCHEI 237


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 671 SLNTIQKTLDAMSINKMNVLHWHIXDDQSF 760
           ++NT  K LD + + +  VL WH   +Q +
Sbjct: 105 NVNTDAKLLDFLQVQEKGVLAWHFIPNQEY 134


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 173 TRGEVWPKPQKETKSDYFYLFRPDVIQIEIVNKKCNLLN-ETIERYTEIWQRQYMIVKRY 349
           T  E  PK   + K D+++LF   V+Q++   K   L++ E+++ +   + ++       
Sbjct: 50  TSKECLPKFSFQNKLDFYFLFSDRVLQLQKERKVLVLIHCESLQSFDSFFAQKLKYADLI 109

Query: 350 NNISTH 367
           ++ + H
Sbjct: 110 SSDNVH 115


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 127 RCSKETQNRYEQHRRHR 77
           RC++E  NRY  HR  R
Sbjct: 94  RCARELANRYNSHRPER 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,416,137
Number of Sequences: 5004
Number of extensions: 73240
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)