Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_C01
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 113 1e-25
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 101 5e-22
03_02_0187 - 6248226-6249226,6249296-6250148 100 3e-21
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 69 3e-12
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 63 3e-10
04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281... 31 0.85
07_03_0691 + 20729452-20729664,20729768-20729962,20730442-207306... 30 2.6
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.6
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 29 4.5
01_05_0752 - 24909954-24910502,24914620-24914786,24914916-249149... 29 4.5
12_02_0689 + 22160627-22160720,22161331-22161425,22161679-221618... 29 6.0
04_04_1626 + 34863691-34863762,34863895-34863939,34864047-348641... 29 6.0
04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414 29 6.0
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 28 7.9
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 113 bits (273), Expect = 1e-25
Identities = 59/149 (39%), Positives = 87/149 (58%), Gaps = 4/149 (2%)
Frame = +2
Query: 395 LGVLKRLTINMSAPCEYYPHFDMDESYNLTV---GANSQMTSLSVWGMMRAFESWTHLLY 565
LG L ++ AP ++ +DESY L + GA + +T+ + WG MR E+++ L +
Sbjct: 110 LGYLTLAVSDLHAPLQH----GVDESYALEILPAGAAATVTAATAWGAMRGLETFSQLAW 165
Query: 566 FTDDSKEIRINK-TEIHDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHI 742
+ + + + + D P Y HRGL+LDTGR Y + I +T+DAM+ NKMNV HWHI
Sbjct: 166 WCGRERAVLVAAGVRVEDRPLYPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVFHWHI 225
Query: 743 XDDQSFPYKSEILPSLXEKGAFHPSMVYT 829
D QSFP + P+L EKG++ M YT
Sbjct: 226 TDSQSFPLELPSEPALAEKGSYGDGMRYT 254
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 101 bits (243), Expect = 5e-22
Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Frame = +2
Query: 452 HFDMDESYNLTVGAN-----SQMTSLSVWGMMRAFESWTHLLYFTDDSKEIRINKT--EI 610
+F +DESYNL+V A +Q+ + +V+G + A E+++ L F S+ I + I
Sbjct: 107 NFGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRLIELQSAPWSI 166
Query: 611 HDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKSEILPSL 790
D P++ +RGLL+DT RHYL + I+ +D+M+ +K+NVLHWHI D+QSFP + P L
Sbjct: 167 TDMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQSFPIEIPSYPKL 226
Query: 791 XEKGAFHPSMVYT 829
GA+ S YT
Sbjct: 227 W-NGAYSYSERYT 238
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 99.5 bits (237), Expect = 3e-21
Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 11/258 (4%)
Frame = +2
Query: 89 MLLVSVLSFFAAPSDSIYIVEPGPKFPPT----RGEVWPKPQKETKSDYFYLFRPDVIQI 256
+L++ +L AAP + P PP + +VWPKP + Y +
Sbjct: 12 LLILVILRPAAAPGAASQPPTSEPHLPPPLLAQKVQVWPKPTSISWPSAVYAPLSPSFSV 71
Query: 257 EIVNKKCNLLNETIERYTEIWQRQYMIVKRYNNISTHVEPHDIEKYLGVLKRLTINMSAP 436
V +L + + YT + + + R+ + V P + ++ LT+++S P
Sbjct: 72 RAVLSHPSL-RQAVAFYTRLIRAE-----RHAPL---VPPANYTLSRVPVRTLTLSVSDP 122
Query: 437 CEYYPHFDMDESYNLTVGANSQMTSLSV---WGMMRAFESWTHLLYF----TDDSKEIRI 595
+ +DESY L+V +S +S WG +R E+++ L + + I
Sbjct: 123 -DVPLGPAVDESYTLSVLPDSGSADISAATPWGAIRGLETFSQLAWAGGGAASGGQPIVP 181
Query: 596 NKTEIHDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKSE 775
+ EI D P + HRG+LLDT R++ + I TL AM+ NK+NV HWHI D QSFP
Sbjct: 182 SGIEISDRPHFTHRGILLDTARNFYPVRDILHTLRAMAFNKLNVFHWHITDAQSFPIVLP 241
Query: 776 ILPSLXEKGAFHPSMVYT 829
+P+L G++ P+M YT
Sbjct: 242 TVPNLANSGSYSPTMRYT 259
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 69.3 bits (162), Expect = 3e-12
Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Frame = +2
Query: 455 FDMDESYNLTVGANS-----QMTSLSVWGMMRAFESWTHLLYFTDDSKEIRINKTEIHDF 619
F +DESYNL+V Q+ + +V+G + A ++ + LL + + DF
Sbjct: 109 FGVDESYNLSVPTAGYPLRVQIEAQTVFGALHALQNSSRLL-----GEFLTHQDFLTEDF 163
Query: 620 PQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKSEILPSLXEK 799
+ R L DT RHYL + I+K +D M+ +K+NVLHWHI D QSFP + P L
Sbjct: 164 LLDQMR-LHADTSRHYLPVTVIKKVIDTMAYSKLNVLHWHIVDAQSFPIEIPSYPKLW-N 221
Query: 800 GAFHPSMVYT 829
G++ S YT
Sbjct: 222 GSYSFSERYT 231
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 62.9 bits (146), Expect = 3e-10
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 15/229 (6%)
Frame = +2
Query: 80 MATMLLVSVLSFFAAPSDSIYIVEPGPKFPPTRGE---VWPKPQKETKSDYFYLFRPDV- 247
+ T L++++L+ AA + P P GE +WP P+ T L PD+
Sbjct: 5 LLTYLILALLAASAAAARR----HPSPASSAAAGEPVYLWPLPRNFTSGSRTLLVDPDLA 60
Query: 248 IQIEIVNKKCNLLNETIERYTEIWQRQYMIVKRYNNISTHVEPHDIEKYLGVLKRLTINM 427
+ + + E ERY + + R N S +D+ K LT+ +
Sbjct: 61 LDGQGPGGAAAAVAEAFERYRSLVFSPWAHAAR--NASGG---YDVGK-------LTVVV 108
Query: 428 SAPCEYYPHFDMDESYNLTVGANSQMTSL---------SVWGMMRAFESWTHLLYFTDDS 580
++ E +DESY + V A + S+ +++G +R E+++ L F D+
Sbjct: 109 ASADEKL-ELGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQLCVFNYDT 167
Query: 581 KEIRINKTE--IHDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKM 721
K + + I D P++ RGLLLDT RH+L ++ I++ +D+MS +K+
Sbjct: 168 KNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFSKL 216
>04_04_1646 -
35027475-35027600,35027713-35027826,35027920-35028106,
35028262-35028379,35028699-35028827,35028947-35028998,
35029525-35029869
Length = 356
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 607 DP*FPAVQASRTPIGHRKTLPVVEYNSENLGRDEHQQNER 726
D P + + P HRK LPVVE + +G E QQN++
Sbjct: 260 DEKLPGEKPPKNPGKHRKFLPVVE--GKGMGNQEKQQNDK 297
>07_03_0691 +
20729452-20729664,20729768-20729962,20730442-20730604,
20730692-20731137
Length = 338
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -1
Query: 129 DGAAKKLRTDTSSIVAIAPTITIFILNLHLHTRTFMGSTVSLL 1
+GA + +R + +S++++AP + +L LH H G S+L
Sbjct: 36 NGAEETVRQEVASVLSVAPYLAGALLRLHFHDCFVRGCDGSIL 78
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 139 NRIGRCSKETQNRYEQHRRHRADHHDFYF---KSAFTHANVHGEY 14
NRI Q +Y+QH+ H +HH + + + H N+ +Y
Sbjct: 167 NRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQQQQYQHQNLQQQY 211
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +2
Query: 506 TSLSVWGMMRAFESWTHLLYFTDDSKEIRINKTEIHDFPQYKHRGLLLDTGRHYLSLNTI 685
T L++ G+ + H++ TD K++R+ K +I + + R L+D + T+
Sbjct: 161 TRLNIVGLDITRQFLLHIVSGTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTL 220
Query: 686 QKTLD 700
Q L+
Sbjct: 221 QNILE 225
>01_05_0752 -
24909954-24910502,24914620-24914786,24914916-24914979,
24915472-24915597,24915673-24915943,24916032-24916287,
24916386-24916754,24916850-24916891,24917474-24917682,
24918074-24918109,24918509-24918918,24919314-24919438,
24920267-24920333,24921596-24921652
Length = 915
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 338 VKRYNNISTHVEPHDIEKYLGVLKRLTI----NMSAPCEYYPHFDMDESYNLTVGANSQM 505
++RY ST PH + Y+ ++L + N P + P +D+ L G
Sbjct: 729 IQRYEGASTLYGPHTLSAYIQEFQKLAMAMIANKEVPTNFQPPDMLDKQIGLLPGVVFDS 788
Query: 506 TSLSV 520
T L V
Sbjct: 789 TPLGV 793
>12_02_0689 +
22160627-22160720,22161331-22161425,22161679-22161822,
22162256-22162513,22162595-22162666,22162759-22162824,
22163212-22163346,22163562-22163697,22163807-22163983,
22164086-22164192,22164281-22164421,22164604-22164740,
22164823-22165076,22165158-22165300,22165423-22165581,
22166049-22166461,22167369-22167474
Length = 878
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 139 LYCRARTEVPTDARRGLAEAAKGNEKRLFLFISPGRHSNRDCK 267
+YCR R +P R L+ + E+R I+P ++ CK
Sbjct: 338 VYCRVRPFLP--GHRSLSSSVADTEERTITIITPTKYGKDGCK 378
>04_04_1626 +
34863691-34863762,34863895-34863939,34864047-34864113,
34864234-34864310,34864570-34864605,34864687-34864742,
34864816-34864915,34864995-34865090,34865167-34865256,
34865466-34865517,34866101-34866156
Length = 248
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -3
Query: 166 ELRSGLDNINRIGR-CSKETQNRYEQH 89
E RSG+ N++ IGR CS+E ++ +E++
Sbjct: 123 EFRSGMLNVSPIGRNCSQEERDEFEKY 149
>04_04_0723 - 27572697-27572793,27572842-27572903,27573229-27573414
Length = 114
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 581 LNHP*NTKDASRTQMLASCPKQINLSSVSLHQLS----DYSSRPCQNVDNIHKEQT 426
L HP + S ++ SC + +N+ + D + R CQN IHK+ T
Sbjct: 16 LEHPSTPQPKSSLSIIVSCKEHLNIRKSKEKKAGSGSKDTNKRKCQNTMPIHKKFT 71
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = -3
Query: 196 LRPDLASRRWELRSGLDNINRIGRCSKETQNRYEQHRRHRADHHDFYFKSAFTHANVH 23
LRP + ++ + GL IN SK+T YE+ ++H D + Y H VH
Sbjct: 435 LRPLTSGKQKQRNDGLGEINGDIITSKDTSIFYEEAKKHLTDILE-YNSHTTKHPTVH 491
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,616,058
Number of Sequences: 37544
Number of extensions: 455721
Number of successful extensions: 1253
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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