Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C01
         (831 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   5e-27
SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)        66   2e-11
SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              58   9e-09
SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              58   9e-09
SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              39   0.004
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.023
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.1  
SB_56448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               29   6.1  
SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   8.1  

>SB_19048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score =   99 bits (238), Expect(2) = 5e-27
 Identities = 46/131 (35%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
 Frame = +2

Query: 425 MSAPCEYYPHFD--MDESYNLTVGANSQMTSLSVWGMMRAFESWTHLLYFTDDSKEIRIN 598
           ++ P E+ P ++  + +   L V        L +       E+++ +++ ++D       
Sbjct: 204 LTFPDEFVPCYNPNLPKIQRLEVTVKEDYEPLKIDNNEACLETFSQIVHQSEDGMYYA-K 262

Query: 599 KTEIHDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKSEI 778
             +I D+P++ HR  ++DT RHYL L+ I+K LDAMS  K NVLHWH+ DDQSFP++S+ 
Sbjct: 263 GNKIEDYPRFHHRAFMIDTSRHYLKLSIIKKFLDAMSYAKFNVLHWHVVDDQSFPFQSQT 322

Query: 779 LPSLXEKGAFH 811
            PSL ++G+F+
Sbjct: 323 FPSLSDQGSFN 333



 Score = 39.5 bits (88), Expect(2) = 5e-27
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 176 RGEVWPKPQKETKSDYFYLFRPDVIQIEIVNKKCNLLNETIERYTEI 316
           +G +WPKPQ E  +   Y   P   +IE++ K  ++L   + RY ++
Sbjct: 158 QGSIWPKPQHEQPTGQLYSLLPSEFRIEVLCKNSDVLQAAVIRYQKL 204



 Score = 32.3 bits (70), Expect = 0.50
 Identities = 12/57 (21%), Positives = 24/57 (42%)
 Frame = +2

Query: 176 RGEVWPKPQKETKSDYFYLFRPDVIQIEIVNKKCNLLNETIERYTEIWQRQYMIVKR 346
           +G +WP PQ +      +   P+     I  K  ++L   + RY  +    + + K+
Sbjct: 47  QGSIWPNPQAQKPDGKVFSLLPNKFSFSINGKTSDVLKAAVNRYMNLTFPDFTVTKK 103


>SB_43323| Best HMM Match : Glyco_hydro_20 (HMM E-Value=3.7e-07)
          Length = 228

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 29/61 (47%), Positives = 41/61 (67%)
 Frame = +2

Query: 608 IHDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKSEILPS 787
           I D P + HRGL+LDTGR +  ++ +  TLDAMS  K+NVLH+H+ D   F  +S++ P 
Sbjct: 47  ISDKPSFVHRGLMLDTGRRFFPMDLLYNTLDAMSYVKLNVLHFHLSDLCRFSVESKLFPD 106

Query: 788 L 790
           L
Sbjct: 107 L 107


>SB_50888| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 804

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 25/71 (35%), Positives = 44/71 (61%)
 Frame = +2

Query: 593 INKTEIHDFPQYKHRGLLLDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKS 772
           + K  I D P++++RG+ +D GR+++  + I K +DA S+ K+N LH H+ DD+ +  + 
Sbjct: 323 VPKVTIRDAPRFEYRGMEIDLGRNFMPKSEILKLIDATSMYKLNKLHLHLTDDEGWRLEI 382

Query: 773 EILPSLXEKGA 805
             LP L   G+
Sbjct: 383 PGLPELTTLGS 393


>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 34/113 (30%), Positives = 55/113 (48%)
 Frame = +2

Query: 467  ESYNLTVGANSQMTSLSVWGMMRAFESWTHLLYFTDDSKEIRINKTEIHDFPQYKHRGLL 646
            E+Y+L +    +   L+       F     L+   D  KE  +    I D P+Y +RG+ 
Sbjct: 1063 EAYSLEIKVAEKEIKLTGSHASGVFYGVQTLIALAD--KENTVPMVTIKDAPRYGYRGMH 1120

Query: 647  LDTGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSFPYKSEILPSLXEKGA 805
            LD GR+++    + K LDAM+  KMN  H+H+ DD+ +  +   L  L   G+
Sbjct: 1121 LDVGRNFMEKAAVLKLLDAMATYKMNKFHFHLTDDEGWRLEIPGLEELTTVGS 1173


>SB_41834| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 296

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 719 MNVLHWHIXDDQSFPYKSEILPSLXE 796
           MNV HWH+ DDQ F  +S++ P L E
Sbjct: 1   MNVFHWHLTDDQGFRIESKVYPKLHE 26


>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +2

Query: 602 TEIHDFPQYKHRGLLLD--TGRHYLSLNTIQKTLDAMSINKMNVLHWHIXDDQSF 760
           ++I D+P  KHRG+LLD  TGR    + T+   +D +S  K+N L  ++ +  +F
Sbjct: 461 SQISDWPDVKHRGILLDVSTGR-VPKMETLMSLVDILSSAKVNQLQLYMQNTFAF 514


>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2202

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 106  NRYEQHRRHRADHHDFYFKSAFTHANVH 23
            N  E H+RHR  HH  Y    + H + H
Sbjct: 941  NYPESHKRHRHSHHHHYQHYQYNHHHDH 968


>SB_56448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 293 TIERYTEIWQRQYMIVKRYNNISTHVEPHDIEKYLGVLKRLTINMSAPCEYYPHFDMDES 472
           TI RYTE W  + ++       ST     D E+ +   K L ++ + P   +      E 
Sbjct: 68  TISRYTEPWDVRTVLAYLKTIPSTADASQDPEQSMSTSKMLRVHKNVPIPSFYVMTHQEQ 127

Query: 473 YN 478
           YN
Sbjct: 128 YN 129


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 383 CRAVLHESKCCCTVLRSYIGAARFPCIVL 297
           CR VL+  K CC VL   +     PC V+
Sbjct: 441 CRVVLYCVKLCCVVLHCVVLCCVVPCCVV 469


>SB_21748| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 373

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/62 (20%), Positives = 29/62 (46%)
 Frame = +2

Query: 263 VNKKCNLLNETIERYTEIWQRQYMIVKRYNNISTHVEPHDIEKYLGVLKRLTINMSAPCE 442
           V +   +L E++  Y E  +    +++ Y +     +  D+ + +GV++R   N     +
Sbjct: 54  VRQNIGVLQESLGNYEEAMKYYQQVLQVYISTGNESKQADVRQNIGVVQRRLGNYEEAMK 113

Query: 443 YY 448
           YY
Sbjct: 114 YY 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,735,953
Number of Sequences: 59808
Number of extensions: 559662
Number of successful extensions: 1591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)