Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_C01
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    26   0.49 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.49 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.49 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.49 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.86 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   3.5  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   3.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   6.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   6.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.0  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 425 C*L*AFSVHLNTSQCRAVLHESKCCCTVLRSYIGAARFPCIVLSFHSVDCTFCLQSL 255
           C L  F+++L  + CR  +H +         Y  +A  PCI   F S D  F  +S+
Sbjct: 21  CWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALF-SKDFRFAFKSI 76


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 425 C*L*AFSVHLNTSQCRAVLHESKCCCTVLRSYIGAARFPCIVLSFHSVDCTFCLQSL 255
           C L  F+++L  + CR  +H +         Y  +A  PCI   F S D  F  +S+
Sbjct: 469 CWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALF-SKDFRFAFKSI 524


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 371 EPHDIEKYLGVLKRLTINMSA---PCEYYPHFDMDESYNLTVGANSQMTSLSVW 523
           +P  IE + GVL    +  S      EY+P F  +E +N     +     L++W
Sbjct: 79  KPLPIEPWHGVLNATVLPNSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIW 132


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 371 EPHDIEKYLGVLKRLTINMSA---PCEYYPHFDMDESYNLTVGANSQMTSLSVW 523
           +P  IE + GVL    +  S      EY+P F  +E +N     +     L++W
Sbjct: 79  KPLPIEPWHGVLNATVLPNSCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIW 132


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
 Frame = -2

Query: 518 QINLSSVSLHQLSDYSSRPC-QNVDNIHKEQTC*L*AFSVHLNTSQCRAVLHESKCCCTV 342
           Q NL    +H LSDY+ +P   +  N  +  TC        ++ S     +   K    +
Sbjct: 140 QKNLQCCGVHSLSDYNDKPIPASCCNSPENNTC-------SISNSYTNGCVEALKDTVKL 192

Query: 341 LRSYIGAARFPCIVLSFHSVDCTFCL 264
             +  G+      ++    + C  CL
Sbjct: 193 AGTVFGSVAIAIAIVELIGIICALCL 218


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 262 NLYLNDVRAK*IKIIAFRFLLRLRPDLASRRWELRSGLDNI 140
           N  +ND+     KI +   ++R+R D   R W + +G+D+I
Sbjct: 97  NWEMNDIN----KIDSIINIIRVRVDACDRLWGVDTGVDDI 133


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/79 (20%), Positives = 36/79 (45%)
 Frame = +2

Query: 464 DESYNLTVGANSQMTSLSVWGMMRAFESWTHLLYFTDDSKEIRINKTEIHDFPQYKHRGL 643
           DE YN+   A+ Q+ + +++ +   F +     YF     E+  N   ++    YKH  +
Sbjct: 17  DEIYNII--ASPQLNNPTLFMIGGVFSNNKSKKYFEQTLNELNFNLNYVNKGVTYKHTII 74

Query: 644 LLDTGRHYLSLNTIQKTLD 700
            +D+     +L+  +  ++
Sbjct: 75  EMDSNPIKTALSVCKSLIE 93


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 137 IYIVEPGPKFPPTRGEVWPKPQ 202
           IYI +P P  P  R E  PK +
Sbjct: 48  IYIPQPRPPHPRLRREAEPKAE 69


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 546 PGRIFCISRMIQRKSGST 599
           PGR FC  R I+R   ST
Sbjct: 132 PGRFFCEVRPIKRVKDST 149


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 440 HKEQTC*L*AFSVHLNTSQCRAVLH 366
           H+  TC L +F   +N S C A  H
Sbjct: 16  HRRVTCDLLSFKGQVNDSACAANCH 40


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -3

Query: 118 KETQNRYEQHRRHRADHHDFYFKSAFTHANVHGE 17
           + T +RY + RR   D +  Y K    +  +H E
Sbjct: 225 QHTSSRYSRERRCSRDRNREYRKKDRQYEKLHNE 258


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 187 DLASRRWELRSGLDNINRIGRCSKETQNRYEQHRRHRADHHDFYFKSAFTH 35
           DL SR  E R  L          +E +  YE+ +R     ++ Y K + TH
Sbjct: 26  DLRSRTKEER--LQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTH 74


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 99  TSSIVAIAPTITIFILNLH 43
           T  +V ++  ITI ILN+H
Sbjct: 305 TMILVGLSVVITIVILNVH 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,812
Number of Sequences: 438
Number of extensions: 5329
Number of successful extensions: 38
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)