Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B22
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical ... 50 1e-06
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 29 2.2
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 29 2.2
AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical ... 29 2.9
AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine r... 28 5.1
U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-link... 27 6.7
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 27 6.7
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 27 6.7
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 27 6.7
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 27 6.7
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 27 8.9
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 27 8.9
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 27 8.9
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 27 8.9
>AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical
protein Y57E12AM.1 protein.
Length = 79
Score = 49.6 bits (113), Expect = 1e-06
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +2
Query: 77 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 256
++I M RYT+P+N A P A F + +VTSTK +R++ KEL ++ +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 257 AXXXXXXXXXXXXWVGIYV 313
+ WVGIYV
Sbjct: 61 SVFLGFGSVFLLLWVGIYV 79
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +1
Query: 154 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGSRLIFWFRYFVLVAM 297
+N+++L L R +Y S ++ ++ +TFI+GS +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +1
Query: 154 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGSRLIFWFRYFVLVAM 297
+N+++L L R +Y S ++ ++ +TFI+GS +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AF003740-6|AAK68240.1| 238|Caenorhabditis elegans Hypothetical
protein C41D11.5 protein.
Length = 238
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 135 CGKTAGFIGDVYRIIDSISRLIFMAILERNTIKNKTNKTRQTQRL 1
CG T + D R I+R +FM + N+TNKT + RL
Sbjct: 133 CGDTCAELNDFER--RKINRDLFMHSCSKEQQSNETNKTNKNHRL 175
>AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 56 protein.
Length = 321
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 265 FWFRYFVLVAMGRDLCVIS 321
FWFRY+VLV+ G C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158
>U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform e protein.
Length = 334
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 217 KRYVQRVTFIIGSRLIFWFRYFVLVAM 297
++ ++ +TFI+GS +I W ++VL +
Sbjct: 251 RKALRTITFILGSFIILWTPFYVLATI 277
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 217 KRYVQRVTFIIGSRLIFWFRYFVLVAM 297
++ ++ +TFI+GS +I W ++VL +
Sbjct: 531 RKALRTITFILGSFIILWTPFYVLATI 557
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 217 KRYVQRVTFIIGSRLIFWFRYFVLVAM 297
++ ++ +TFI+GS +I W ++VL +
Sbjct: 584 RKALRTITFILGSFIILWTPFYVLATI 610
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 217 KRYVQRVTFIIGSRLIFWFRYFVLVAM 297
++ ++ +TFI+GS +I W ++VL +
Sbjct: 581 RKALRTITFILGSFIILWTPFYVLATI 607
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 217 KRYVQRVTFIIGSRLIFWFRYFVLVAM 297
++ ++ +TFI+GS +I W ++VL +
Sbjct: 531 RKALRTITFILGSFIILWTPFYVLATI 557
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 171 SRPGSSFTKLQVLKPQEICSKSYFYHW*PPYFLVSVFCSCCYG*GFMCDINVRYNLSYE* 350
S+ GSS ++ + + SY + + + V+VFC Y C ++ YNL
Sbjct: 319 SKTGSSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFASE 378
Query: 351 CNNTPF 368
N PF
Sbjct: 379 KNRIPF 384
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 171 SRPGSSFTKLQVLKPQEICSKSYFYHW*PPYFLVSVFCSCCYG*GFMCDINVRYNLSYE* 350
S+ GSS ++ + + SY + + + V+VFC Y C ++ YNL
Sbjct: 384 SKTGSSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFASE 443
Query: 351 CNNTPF 368
N PF
Sbjct: 444 KNRIPF 449
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 171 SRPGSSFTKLQVLKPQEICSKSYFYHW*PPYFLVSVFCSCCYG*GFMCDINVRYNLSYE* 350
S+ GSS ++ + + SY + + + V+VFC Y C ++ YNL
Sbjct: 319 SKTGSSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFASE 378
Query: 351 CNNTPF 368
N PF
Sbjct: 379 KNRIPF 384
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +3
Query: 171 SRPGSSFTKLQVLKPQEICSKSYFYHW*PPYFLVSVFCSCCYG*GFMCDINVRYNLSYE* 350
S+ GSS ++ + + SY + + + V+VFC Y C ++ YNL
Sbjct: 384 SKTGSSLSESCIFFYLGVSLVSYNHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFASE 443
Query: 351 CNNTPF 368
N PF
Sbjct: 444 KNRIPF 449
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,239,342
Number of Sequences: 27780
Number of extensions: 183405
Number of successful extensions: 404
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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