Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B21
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    30   0.38 
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   6.2  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.2  

>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 437 FISIRIEFIFSKLTTN*NKMFSTYLV--NIW 523
           FI++R +++FSKLTT   K   T L   NIW
Sbjct: 598 FINLRCKYLFSKLTTLHEKEIDTLLTIPNIW 628


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 674 YFYIYNNFVVHKWLDVSFEIKINYIN---YISITRL*KHSYITIIIHRLTFTIT 522
           +F++  + +   WL  +F IK NYI    Y   T +  H Y+     +LT T+T
Sbjct: 416 FFWVIGSELFVDWLKHAFIIKFNYIKPSIYSRFTDVLCHDYVASGA-QLTQTVT 468


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 12  HRSGYNKKLFNLIVHD-FKKQ 71
           HR+GYN + +NL+  D F K+
Sbjct: 229 HRTGYNGRKYNLVFSDEFNKE 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,892
Number of Sequences: 5004
Number of extensions: 41787
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)