Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B21
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    30   1.4  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 211 ILFAIKPCTXKAQYPF*ACFILVFFCLFFTSMFLYYFWISECDIKLNC 68
           + F    C  +++ P  A FIL+F  + F  + ++ +  +  D  +NC
Sbjct: 110 LFFPFFYCANRSKLPLFAIFILIFSLIIFDQIIMFGYCGNTIDTPMNC 157


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 154 FILVFFCL-FFTSMFLYYFWISECDIKLNCFLKS 56
           +I+VF C  FFT +F  Y ++  CD      LKS
Sbjct: 376 YIVVFDCKSFFTKLFSPYAYVISCDSNSGNVLKS 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,986
Number of Sequences: 27780
Number of extensions: 232578
Number of successful extensions: 430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)