Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B17
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    27   2.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   4.0  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   7.1  

>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = -2

Query: 144 VVLFILFDVLPHRCDAPG*RPTVHRSLVLHVFNLLLQCFFVHCLPSIL 1
           V LF+L  V+P   D PG R + + ++++  F + +Q   +  LPSI+
Sbjct: 301 VALFMLTLVVPS--DLPGLRTSDNSNVLISPFVIAIQLANIRALPSIM 346


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 61  YQASMDRWPLSRSIAAMREYVEENEKNDPLYTRSGQKEQPLGRER 195
           Y  S   +  SRS +  R     N  N   Y R  ++  P GRER
Sbjct: 644 YSRSTRSYSKSRSYSRSRSVTPINNINHKKYIRKDRELSPRGRER 688


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 173 SFCPERVYRGSFFSFSSTYSLIAAMLLDSGQRSIEAWYFMFSICFFSAS 27
           +FC   + R  ++S+   Y+LI A  +D G  +I   +  F + +   S
Sbjct: 710 AFCFNYLIRRGYYSWWKKYNLITAAAMDCGV-AIAGLFIYFCVVYTGGS 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,162
Number of Sequences: 5004
Number of extensions: 50940
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)