Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B17
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432...    29   4.2  
03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995     28   7.4  
05_03_0505 + 14773210-14773506                                         28   9.7  

>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
            27043601-27043705,27043828-27044257,27044356-27044517,
            27044565-27045260,27045349-27046128,27046441-27046654,
            27047621-27047981,27047993-27048140,27048276-27048419,
            27048784-27048888,27049749-27049794,27050089-27050255,
            27050338-27050490,27050654-27050950,27051053-27051220,
            27051298-27051363,27051451-27051927,27052031-27052768,
            27052935-27053120
          Length = 1993

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 40   KQIENMKYQASMDRWPLSRSIAAMREYVEENEK-NDPLYTR-SGQKEQPLGRER 195
            K +EN+     M R  +   IA  R  +EE ++  D LY      KEQ L  ER
Sbjct: 1451 KDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLER 1504


>03_06_0708 - 35667547-35667578,35667741-35667794,35667828-35668995
          Length = 417

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 195 PFSAQGLFFLSGACIQGVVLFILFDVLPHR 106
           PF A  L    GAC    +   LFD LPHR
Sbjct: 87  PFFASALVASYGACASPALARRLFDELPHR 116


>05_03_0505 + 14773210-14773506
          Length = 98

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 382 PDNRNTAIRRKKRTKEI*HNYCFHLIIIF 468
           P N + A+R+ KRT+E+ H++ F   ++F
Sbjct: 17  PPNGSGALRQCKRTEEVCHDFLFFSPLLF 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,847,070
Number of Sequences: 37544
Number of extensions: 286389
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)