Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B17
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeri...    33   0.23 
AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, ga...    33   0.23 
AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine re...    30   2.2  
AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical ...    29   5.0  

>AF291849-1|AAK55966.1|   62|Caenorhabditis elegans heterotrimeric G
           protein gammasubunit 2 protein.
          Length = 62

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 146 PCIHAPDKKNNPWAEKGKCIIM 211
           P ++  DKK NPWAEK KC ++
Sbjct: 41  PLVNPIDKKVNPWAEKSKCSML 62


>AF106590-1|AAC78236.1|   62|Caenorhabditis elegans G protein, gamma
           subunit protein 2 protein.
          Length = 62

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 146 PCIHAPDKKNNPWAEKGKCIIM 211
           P ++  DKK NPWAEK KC ++
Sbjct: 41  PLVNPIDKKVNPWAEKSKCSML 62


>AF016447-5|AAX22290.1|  397|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 19 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -3

Query: 719 SETMRLPKMMDRFFCSHFPVITLSIRYFHAQTF 621
           SE + +  +    F   +PV++LS+RYF+A+T+
Sbjct: 299 SEFLYIVTISQAVFIVVYPVLSLSMRYFYAETY 331


>AF016659-1|AAB66047.3| 1251|Caenorhabditis elegans Hypothetical
           protein F40E12.2 protein.
          Length = 1251

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 37  KKQIENMKYQASMDRWPLSRSIAAMREYVEENEK 138
           K  + NM+ +A    W    S+ AM+EY E + K
Sbjct: 405 KDDLNNMRTEAEFATWKSRGSLKAMKEYFEGHRK 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,509,593
Number of Sequences: 27780
Number of extensions: 284931
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)