Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B15
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 423 e-119
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 239 4e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 239 5e-64
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 217 1e-57
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 31 0.30
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.52
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.52
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.69
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 3.7
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 4.9
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 6.4
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 6.4
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 26 6.4
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 423 bits (1043), Expect = e-119
Identities = 192/273 (70%), Positives = 222/273 (81%)
Frame = +2
Query: 89 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 268
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 269 PRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 448
PRA+LVDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120
Query: 449 RKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVV 628
R+E+E+CD LQGFQ KIREEYPDR+M T+SV P+PK SDTVV
Sbjct: 121 RREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVV 180
Query: 629 EPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCL 808
EPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLVS M+GVTT
Sbjct: 181 EPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSF 240
Query: 809 RFPGQLNADLXKLAVNMVPFPRLXFFMPGFAPL 907
RFPG+LN+DL KLAVNMVPFPRL FFM GFAPL
Sbjct: 241 RFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 239 bits (585), Expect = 4e-64
Identities = 111/279 (39%), Positives = 167/279 (59%), Gaps = 6/279 (2%)
Frame = +2
Query: 89 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 250
MRE++ + GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 251 SGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 430
GK+VPR+I VDLEP +D VR+GP+ +F P+ V G+ A NN+A+GHYT G E++D
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 431 SVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPK 610
SVL+ +R+ +++C LQGF ++ EY + +SV P+P+
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQ 180
Query: 611 VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMS 790
VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++ +S
Sbjct: 181 VSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVS 240
Query: 791 GVTTCLRFPGQLNADLXKLAVNMVPFPRLXFFMPGFAPL 907
+T LRF G LN DL + N+VP+PR+ F + ++P+
Sbjct: 241 SITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPI 279
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 239 bits (584), Expect = 5e-64
Identities = 111/275 (40%), Positives = 164/275 (59%), Gaps = 2/275 (0%)
Frame = +2
Query: 89 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGK 262
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 442
YVPR+I VDLEP +D VR+GP+ +F P+ + G+ A NN+A+GHYT G ELVD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 443 VVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDT 622
+R+ +++C LQGF ++ EY + +SV P+P+VS +
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTS 180
Query: 623 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTT 802
VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++ +S +T
Sbjct: 181 VVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITA 240
Query: 803 CLRFPGQLNADLXKLAVNMVPFPRLXFFMPGFAPL 907
LRF G LN DL + N+VP+PR+ F + +AP+
Sbjct: 241 SLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPI 275
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 217 bits (531), Expect = 1e-57
Identities = 102/274 (37%), Positives = 160/274 (58%), Gaps = 3/274 (1%)
Frame = +2
Query: 92 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 271
REI+ LQAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ +Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 272 RAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 445
RAIL+DLEP ++++ S +G ++ P+N + ++ GAGNNWA G Y+ + + ++D+
Sbjct: 63 RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121
Query: 446 VRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDT 622
+ +E++ D L+GF ++ + YP +I+ TYSV P S VSD
Sbjct: 122 IDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDV 181
Query: 623 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTT 802
VV+PYN+ L++ +L N D +DN AL I L PT+ N LVS MS TT
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTT 241
Query: 803 CLRFPGQLNADLXKLAVNMVPFPRLXFFMPGFAP 904
LR+PG +N DL + +++P PR F + + P
Sbjct: 242 TLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 30.7 bits (66), Expect = 0.30
Identities = 26/115 (22%), Positives = 58/115 (50%)
Frame = +3
Query: 381 ATTGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 560
+TT ++ SS T ++ S+ + + + + +S+ S ++ + SSS S
Sbjct: 134 STTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 193
Query: 561 STPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSAS 725
S+ + S + + S P + SS+H+ S +S + ++P++S++ + T S+S
Sbjct: 194 SSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSS-SSSSSRPSSSSSFITTMSSS 247
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.52
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +3
Query: 393 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 572
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 573 ES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRL 707
+ ++ P P + S+++ +R S L QT T+ T +
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR-SHSPVLLTPQTLSTSETKHI 320
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.52
Identities = 30/96 (31%), Positives = 45/96 (46%)
Frame = +3
Query: 483 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS 662
+S+L P + P + SS+ + T T S T T SP P T + T + +S
Sbjct: 184 SSSLSTP-ITPTVPPTSTSSTSIPIPPTSTSS-TDTNSSPLPTTSTSCTTSTSIPTGGSS 241
Query: 663 *LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 770
L T PT T +TS++++ P PPT T +T
Sbjct: 242 SLSTPITPTVPPT---STSSTSI---PIPPTSTSST 271
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 672 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 770
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.6
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 4/168 (2%)
Frame = +3
Query: 417 LSSLTRSSM*SAKNQNLAIAYRASNLHIPSVA--APGPVWAPSSSQRSVKSTPTES*THT 590
L+S T SS+ S+ + + S+ S A + + SSS S S+P+ S + T
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229
Query: 591 Q*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 770
S ++ S + S +S + + TAS++ ++ S+ S+ PT T +T
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSST 289
Query: 771 -*FPSQCLVSPLALGSPV-S*TLISXNWP*TWFPSRVSXSSCQVSLPS 908
S SP + S + S + S ++ T S +S SS S P+
Sbjct: 290 ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPT 337
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 392 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 481
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 128 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 229
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 323 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 424
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 379 SAGLSEDEVVRTEDLSERSRADRVHGAGLQVDEDG 275
S G+S E+ R +D S+ R +RVH DEDG
Sbjct: 238 STGISGFEINRQKDTSDMKRNNRVH----MDDEDG 268
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 465 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 560
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 72 KITYTK*GKSFIYRPANVV 128
+I+YT G SFIYRP N++
Sbjct: 64 EISYT--GTSFIYRPGNII 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,668,669
Number of Sequences: 5004
Number of extensions: 76902
Number of successful extensions: 274
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -