Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B12
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 57 3e-09
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 28 1.5
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 28 1.5
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe... 28 1.9
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 3.4
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 27 3.4
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 27 4.5
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 26 5.9
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 26 7.8
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 7.8
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz... 26 7.8
>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 57.2 bits (132), Expect = 3e-09
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 536 PSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVF 715
P+ YGF +YL S ++ +WA TP L +F I+YY ++W+ A+P +L L ++
Sbjct: 5 PTYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIP-TWLFVLVIY 63
Query: 716 AFLIYPSINM-ILTPHIDSPNTFQDKFS 796
++ + N +LT S D+++
Sbjct: 64 IHVVLNAYNTEVLTKPFSSLECIVDQYA 91
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 524 PAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVA 703
PA T S LY FF L S+ + +W + P S +H+ +Y P+K P L A
Sbjct: 690 PALT-SEWLY-FFDQLHSQCYKGNYELWRYIPYSIIHFHYLYATPEKCRLPHPPRSDLEA 747
Query: 704 LTVF 715
L ++
Sbjct: 748 LKLY 751
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +2
Query: 206 YYNKIISLVEMNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSN 385
Y N I S+ E T+ +A+ K+ F+ + AS+ Y++ + L SG+ L +
Sbjct: 454 YLNNIWSVFEYKDPSTKLSALIPKYFFSELNIASICYEISSGLAFLHNSGI-AHHNLTTE 512
Query: 386 VLYIEFKSLDLK 421
+Y+ KS LK
Sbjct: 513 CIYLT-KSSCLK 523
>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 518 HTPAPTPSRSLYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNI 646
HT A T + GF L+L S+T L WAF S F +
Sbjct: 81 HTKAVTKGLKI-GFMLFLISETFLFASIFWAFFHSSLSPTFEL 122
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 600 VFGLLHQIVFYIILTFITIHKNTGPQHYQYNFW 698
VFGL++ I+ +++ + I++ PQH W
Sbjct: 657 VFGLIYFIIGFLVYKYELIYQMEHPQHSTGELW 689
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 675 VDQYFCG***MLK*CRKLSGVKAQIQNIVRVVLLNKYRKKPYKDLDGV 532
+DQ FC +K CR+ +++ V +V + R++ Y DL+G+
Sbjct: 47 IDQIFCS---SMKRCRETIAPYLELKPEVPIVYTDLIRERVYGDLEGM 91
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 530 PTPSRSLYGFFLY-LFSKTTLTMFCIWAFTPDSFLHY 637
PT LYG L L SKTT ++ I A+ P +HY
Sbjct: 122 PTLENILYGSNLSSLLSKTTHSILDILAWVPYGVMHY 158
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 15 LCIDNTRSREKLCFPTVX-SRAKTIKS*QYYLQK*VLXHNKLYTN 146
L D ++S K SRAKT+ +Y +Q HN+L TN
Sbjct: 166 LSFDRSKSSRKRAVEVAEFSRAKTMSPLEYTVQHPYQSHNELSTN 210
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 365 LYVHHFLLIPCQHLVHR 315
L+ F+L PCQH HR
Sbjct: 844 LFSEPFVLFPCQHAFHR 860
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 206 YYNKIISLVEMNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSG 355
+ +KI LVE + + T + + +N L+Y++ VD G G
Sbjct: 883 FRDKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLG 932
>SPBC1A4.06c |||mitochondrial matrix protein import
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 223 IISRNEHEMYGKNSYNSKILIHV 291
+I + E E Y +NSYN +HV
Sbjct: 186 VILKGEDEFYKENSYNLSSALHV 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,217
Number of Sequences: 5004
Number of extensions: 70550
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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