Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B12
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760     64   2e-10
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510...    50   2e-06
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703...    50   2e-06
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    49   4e-06
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888     31   1.5  
07_03_1541 + 27575006-27575089,27575361-27575460,27575643-275757...    28   8.2  

>03_05_0449 - 24437994-24438157,24438265-24438383,24438489-24438760
          Length = 184

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 27/83 (32%), Positives = 45/83 (54%)
 Frame = +2

Query: 548 LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQFLVALTVFAFLI 727
           +YGF   + +    T++ +WA+ P+  L    I YYP +YW+ A+P  F++  T    ++
Sbjct: 53  VYGFVGSITTVIATTVYLVWAYMPERCLRSLGITYYPSRYWALAVP-SFVIVATALCMVV 111

Query: 728 YPSINMILTPHIDSPNTFQDKFS 796
           Y   N + TP   S NT  D++S
Sbjct: 112 YVGFNFLATPPPTSFNTIFDEYS 134


>08_02_1388 +
           26649874-26649905,26650243-26650365,26650980-26651013,
           26651792-26651893,26652174-26652241,26652518-26652571,
           26653139-26653211,26653428-26653537,26653615-26653719,
           26653842-26653941,26653979-26654088,26656234-26656306,
           26656429-26656484,26656576-26656702
          Length = 388

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 41/70 (58%)
 Frame = +2

Query: 275 KFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILK 454
           +  + S + AS+VY  L VDKEL+   V RE  +    L + F++++ + LR + +A + 
Sbjct: 307 EIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVD 366

Query: 455 NILLITKTVE 484
             +L+TK VE
Sbjct: 367 LTVLVTKLVE 376


>02_02_0595 +
           11968298-11968329,11969405-11969438,11970216-11970317,
           11970598-11970665,11970942-11970995,11971563-11971635,
           11971852-11971961,11972039-11972143,11972266-11972365,
           11972403-11972512,11974664-11974736,11974859-11974914,
           11975006-11975132
          Length = 347

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 41/70 (58%)
 Frame = +2

Query: 275 KFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILK 454
           +  + S + AS+VY  L VDKEL+   V RE  +    L + F++++ + LR + +A + 
Sbjct: 266 EIDYGSEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVD 325

Query: 455 NILLITKTVE 484
             +L+TK VE
Sbjct: 326 LTVLVTKLVE 335


>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 524 PAPTPSRS---LYGFFLYLFSKTTLTMFCIWAFTPDSFLHYFNIYYYPQKYWSTALPIQF 694
           P   PSR     YGF   + +      +  WA+ P+ +L +  + YYP ++W+ A+P   
Sbjct: 757 PTADPSRGSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWALAMP-SL 815

Query: 695 LVALTVFAFLIYPSINMILTP 757
           L+       ++Y + N +L P
Sbjct: 816 LLEAAAQGMVLYMASNFLLAP 836


>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
          Length = 748

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 236 MNTKCTEKTAITLKFSFTSNDNASLVYDVLNVDKELKGSGVHREFQLKS 382
           +N K  + TA   +  FT     SL Y+V  + KEL+     REF LKS
Sbjct: 82  LNQKLIDATA---RLEFTHKQCGSLQYEVRILQKELEIRNKEREFDLKS 127


>07_03_1541 +
           27575006-27575089,27575361-27575460,27575643-27575782,
           27575948-27576163
          Length = 179

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 317 DVLNVDKELKGSGVHREFQLKSNVLYIEFKSLDLKRLRVAVNAILKNILLI 469
           DV   D+ LKGS +   F LK    ++   SLD   L+  +  I+  ILL+
Sbjct: 88  DVPASDRALKGSSLFGMFALKERPRWMRISSLD--ELKTKLGHIIVMILLV 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,448,131
Number of Sequences: 37544
Number of extensions: 367154
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)