Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B11
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   0.93 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    26   2.2  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   2.8  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    24   8.7  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    24   8.7  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    24   8.7  

>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 8   FFLMSSRAGVLDHQSTLKTAQNVRETVHSVRRPRL*LWQDLNRSTL 145
           +F++ S A   D+++ L   Q + E ++S +   L +WQ+LN + L
Sbjct: 75  YFIVRSEA---DNETILLKTQLIAEDIYSRQEETLIVWQELNGTDL 117


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 143 LVTATTITDIRIQATSVIPDTVPWPMDRTVAMLPL 247
           +V  TTIT +     +++ +T+  PM+ T  +LP+
Sbjct: 120 MVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 89  EQFREHFEQFSKLTDDLGHRRVTTLKKI 6
           E FREHF+  S L D +G  R     KI
Sbjct: 375 EDFREHFKTVSALMDCVGCERCRLWGKI 402


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 211 GDCIRDNRRSLDTYIRNCCSRNQSRSVEVLPELQARTANRMNSF 80
           G   +D R++L+T       +++ R  E  P+L     +  N+F
Sbjct: 170 GTVKQDERKALETLFNELMHKDEKRIQEFTPQLVQLAKSDANNF 213


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 80  REHFEQFSKLTDDLGHRRVTTLKKIC 3
           R+H  QFS +T+ LG   +  ++ IC
Sbjct: 217 RDHVNQFSIITELLGTPPMEVIETIC 242


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
 Frame = +2

Query: 14  LMSSRAGVLDH--QSTLKTAQNVRETVHSVRRPRL*LWQDLNRSTLVTATTITDIRIQAT 187
           +M SR  + D    S L    ++    H  R+     W     + L T  T    RI  T
Sbjct: 216 IMESRQWIRDLLLPSRLGLLLDIGRIQHPTRKGMFTCWN----TRLNTRPTNYGTRIDYT 271

Query: 188 SVIPDTVPWPMDRTV 232
              PD +PW  D  +
Sbjct: 272 LATPDLLPWVQDADI 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,052,503
Number of Sequences: 5004
Number of extensions: 15822
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)