Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B11
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0368 + 2739908-2740320,2740437-2740816,2740893-2740977,274...    28   2.8  
03_02_0177 - 6185091-6185355,6185468-6185524,6185725-6186089,618...    28   2.8  
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635...    27   4.9  
01_01_0536 - 3926450-3928447                                           27   4.9  
05_04_0413 - 21063868-21064344,21064416-21064482,21064865-210649...    27   8.6  

>07_01_0368 +
           2739908-2740320,2740437-2740816,2740893-2740977,
           2741053-2741167,2741493-2741615
          Length = 371

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -3

Query: 196 DNRRSLDTYIRNCCSRNQSRSVEVLPELQARTANRMNSFANILSSFQS 53
           D +R L+ + R+  S+ +    E+L ELQ  +A +MN+     SSFQS
Sbjct: 92  DGKRRLEEWTRSVDSQLE----EILTELQQLSAAQMNAVKVSTSSFQS 135


>03_02_0177 -
           6185091-6185355,6185468-6185524,6185725-6186089,
           6186180-6186332,6186422-6186655,6190532-6190978,
           6191549-6191652,6192240-6192351
          Length = 578

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -3

Query: 220 HRPGDCIRDNRRSLDTYIRNCCSRNQSRSVEVLPELQARTANRMNSFANI 71
           H+ G  +RD    +D  ++N     ++ S+E+ P   A T   +NS+  I
Sbjct: 121 HKKGGIVRDYNNKVDRIMKNHSGGIKTFSLELHPFSNANTYYHLNSWLEI 170


>01_06_1060 +
           34162161-34162554,34162613-34162675,34163262-34163531,
           34163944-34164623
          Length = 468

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 208 DCIRDNRRSLDTYIRNCC-SRNQSRSVEVLPELQARTANRMNS 83
           DC++  RR L+ +   CC SRN     +V   L   T + M +
Sbjct: 128 DCLQGCRRLLEVHPLTCCESRNMMHGFQVCHSLGGGTGSGMGT 170


>01_01_0536 - 3926450-3928447
          Length = 665

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 261 AEVVWRGSIATVRSIGQGTVSGITDVAWIRISVIVVAVTRVDLLRSC 121
           A V+W   I+     G+  +S  + V  +R S +  AVT V +L +C
Sbjct: 125 APVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC 171


>05_04_0413 -
           21063868-21064344,21064416-21064482,21064865-21064948,
           21065028-21065158,21065504-21065560,21065818-21065866,
           21067357-21067442,21067715-21067792,21067952-21068074,
           21068705-21068794,21068796-21068849,21068923-21069020,
           21069093-21069160,21069688-21069777,21069870-21070117
          Length = 599

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 250 MERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVEV 125
           + +  S R   R   C+     ++DT+ R C S N   +V V
Sbjct: 326 IRKSRSIREFDRHATCVVAKYETVDTFYRRCSSANYISNVSV 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,759,973
Number of Sequences: 37544
Number of extensions: 103270
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)