Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B11
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   5.8  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF026211-6|AAB71290.1|  277|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 253  CMERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVE 128
            C E   S+  +HR   C+ D+ R +D    + C R Q  + E
Sbjct: 1030 CSETCGSNGKMHRKSYCVDDSNRRVD---ESLCGREQKEATE 1068


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 253  CMERQHSHRTIHRPGDCIRDNRRSLDTYIRNCCSRNQSRSVE 128
            C E   S+  +HR   C+ D+ R +D    + C R Q  + E
Sbjct: 1030 CSETCGSNGKMHRKSYCVDDSNRRVD---ESLCGREQKEATE 1068


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +1

Query: 34  CPRSSVNFENCSKCSRNC-SFCSPSSLVALARPQ 132
           C  + V    CS C+ NC S CS ++ +    P+
Sbjct: 207 CSSACVQAVTCSTCTNNCPSICSQANCIPQCMPR 240


>AF026211-6|AAB71290.1|  277|Caenorhabditis elegans Hypothetical
           protein T13B5.6 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 125 LARATSEDGEQNEQFREHFEQFSKLTDDLGHR 30
           +A AT    + +E+FR+HF    +L  DL  +
Sbjct: 11  VALATMVQADFSEKFRDHFSNLPELLKDLSRK 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,893,788
Number of Sequences: 27780
Number of extensions: 91966
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)