Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B09
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    27   2.9  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    27   3.9  
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    25   8.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   8.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 513 PDCPAPGRARVPPTAPRGSPYSTTT*RILISAPGTARARDQSPEAPGRRLPLRGKTISLR 692
           P    P   +VPP     +P + T+ R    AP    A + + E+P  + P RG +I   
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESP--KFPNRGPSIPSA 248

Query: 693 STLPWRP 713
           S  P  P
Sbjct: 249 SVPPVPP 255


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 522 PAPGRARVPPTAPRGSPYSTTT*RILISAPGTARARDQSPEAPGRRLP 665
           P  GR+  PP  PR +P +      L S+   +      P  PGR  P
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 641 GGSGAKAPFKRKNDQPQINTTVETTNKV 724
           GG   KAP K+KN +   NTT ++T  V
Sbjct: 25  GGQRIKAPNKKKNRKASKNTTKKSTVSV 52


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 262 CLRNGLGRPHQRLVCSNHQNMQVL 333
           CLRN   + H   VCSNH  ++ L
Sbjct: 13  CLRNVTPKQHPARVCSNHWQLKNL 36


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 504 GCCPDCPAPG 533
           GCCP C +PG
Sbjct: 33  GCCPQCTSPG 42


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 368 HENYCGVRTEQCPDCREWVMIKYRQLHLDSNH 463
           H     +R   C DCRE++ +     H  S+H
Sbjct: 426 HLRLANLRIAYCEDCREFISLNAALDHRRSHH 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,205
Number of Sequences: 5004
Number of extensions: 51208
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)