Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_B09
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical pr... 32 0.39
AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein. 32 0.39
Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 31 0.68
AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical ... 30 2.1
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ... 30 2.1
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 28 6.3
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 28 6.3
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 28 6.3
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 28 6.3
>Z93382-9|CAB07615.2| 462|Caenorhabditis elegans Hypothetical
protein F45G2.6 protein.
Length = 462
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 242 CKQCGDSVCGTDLEDHIRDSCAQTIKTCRFCELELPRRELPPHENYCGVRTEQCP 406
C++CG DLE H R C C FC + + H C CP
Sbjct: 111 CEKCGRQFAKNDLEKH-RAKCELNRAVCSFCNKTIRDSDRERHPKTCPQVIISCP 164
>AF348168-1|AAK37546.1| 462|Caenorhabditis elegans TRF-1 protein.
Length = 462
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 242 CKQCGDSVCGTDLEDHIRDSCAQTIKTCRFCELELPRRELPPHENYCGVRTEQCP 406
C++CG DLE H R C C FC + + H C CP
Sbjct: 111 CEKCGRQFAKNDLEKH-RAKCELNRAVCSFCNKTIRDSDRERHPKTCPQVIISCP 164
>Z83223-3|CAB05717.2| 385|Caenorhabditis elegans Hypothetical
protein E01G4.5 protein.
Length = 385
Score = 31.9 bits (69), Expect = 0.51
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 242 CKQCGDSVCGTDLEDHIRDSCAQTIKT--CRFCELELPRRELPPHENYCGVRTEQCPDC 412
C+ CG CG +D + D+C T K C L+ ++ PH C V C DC
Sbjct: 305 CRSCGHFECGQQEKDVVCDTCNVTFKNQMCYDNHLKKVSQQALPHCEKCFV----CRDC 359
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 31.5 bits (68), Expect = 0.68
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 522 PAPGRARVPPTAPRGSPYSTTT*RILISAPGTARARDQ--SPEAPGRRLPLRGKTISLRS 695
P PG+ RVPPT R P T T + P T+ + +P P + P GK S
Sbjct: 289 PVPGQQRVPPTQTRNPPNPTNTRQPSRPVPPTSDGHIEATTPYNPSAQYP-TGKRGSHPG 347
Query: 696 TLPWRP 713
P RP
Sbjct: 348 FGPQRP 353
>AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical
protein T27C4.2 protein.
Length = 643
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Frame = +2
Query: 608 TGDCESAGPVPGGSGAKAPFK----RKNDQPQINTTVETTNKVWK---DLSISRGAV 757
T DC GP+ G + + +K +K D P TTV T+ V++ DLS+S A+
Sbjct: 149 TNDCADCGPIIGSTVLEKDWKDKTPKKTDIPM--TTVSPTSTVYRMETDLSVSGNAI 203
>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
protein ZC123.3 protein.
Length = 1623
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +2
Query: 278 LEDHIRDSCAQTIKTCRFCELELPRRELPPHENY-CGVRTEQCPDCREWVMIKYR-QLHL 451
LE H+++ C FC P +L E Y CG + +C CR K +H+
Sbjct: 117 LEIHMKEKHNDVDVKCMFCAENRPHPKLARGETYSCGYKPYRCDLCRYSTTTKGNLSIHM 176
Query: 452 DSN 460
S+
Sbjct: 177 QSD 179
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 510 CPDCPAPGRARVPPTAPRGSPYSTTT*RILISAPGTARARDQSPEAP 650
C +C P A PP P G P TT + A + R + P AP
Sbjct: 991 CEECICPQTAPTPPHVPTGRP--TTVGQAQPPASSSRRVTEVGPPAP 1035
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +3
Query: 522 PAPGRARVPPTAPRGSPYSTTT*RILISAPGTARARDQSPEAPGRRLPLRGKT 680
PAP R R P+A + P AP A++R +SP A RR P K+
Sbjct: 342 PAPARRRRSPSASKSPP----------PAPKRAKSRSKSPPARRRRSPSASKS 384
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 557 AARVSIFDNYVKNINLGTGDCESAGPVPGGSGAKAPFKRKNDQPQINTTVETTNKV 724
A VSI D + ++ + TG + + G K FKR I++T T+N++
Sbjct: 757 ATDVSIVDQNIVDMAMETGQLRNTKRIDDGP-IKKSFKRTESAVTIDSTTSTSNQI 811
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +2
Query: 227 VRIVPCKQCG-DSVCGTDLEDHIRDSC-AQTIKTCRFCELELP-RRELPPH-ENYCGVRT 394
++I CKQCG S+ D H R A+ C+ C + L H N+ G +
Sbjct: 513 IKIFKCKQCGHQSLSKDDQWAHARTHIPAEKQLNCQHCNFVTEYKHHLEYHYRNHIGSKP 572
Query: 395 EQCPDC 412
QC C
Sbjct: 573 FQCKKC 578
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +2
Query: 227 VRIVPCKQCG-DSVCGTDLEDHIRDSC-AQTIKTCRFCELELP-RRELPPH-ENYCGVRT 394
++I CKQCG S+ D H R A+ C+ C + L H N+ G +
Sbjct: 535 IKIFKCKQCGHQSLSKDDQWAHARTHIPAEKQLNCQHCNFVTEYKHHLEYHYRNHIGSKP 594
Query: 395 EQCPDC 412
QC C
Sbjct: 595 FQCKKC 600
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +2
Query: 227 VRIVPCKQCG-DSVCGTDLEDHIRDSC-AQTIKTCRFCELELP-RRELPPH-ENYCGVRT 394
++I CKQCG S+ D H R A+ C+ C + L H N+ G +
Sbjct: 535 IKIFKCKQCGHQSLSKDDQWAHARTHIPAEKQLNCQHCNFVTEYKHHLEYHYRNHIGSKP 594
Query: 395 EQCPDC 412
QC C
Sbjct: 595 FQCKKC 600
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,226
Number of Sequences: 27780
Number of extensions: 330405
Number of successful extensions: 1149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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