Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_B09
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 190 HIHEMDEEQTKLCPNCSV*AVW 255
           HI ++DE+   L  NC V  +W
Sbjct: 41  HIIDVDEKNQILTTNCWVTQIW 62


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 139 NNLISSRNNTSAQNCKMKNNYICNVFWIRFSVIN 38
           NN   + NN +  N    NNY  N   + +++IN
Sbjct: 327 NNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 606 APGTARARDQSPEAPGRRLP 665
           APG   +  QSP+AP R  P
Sbjct: 20  APGPQPSPHQSPQAPQRGSP 39


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 374 NYCGVRTEQCPDCR 415
           +YCG+R  + PD R
Sbjct: 626 SYCGLRDRKYPDAR 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,438
Number of Sequences: 438
Number of extensions: 4166
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)